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@stracquadaniolab

Stracquadanio Lab

A data-driven engineering biology research group at the University of Edinburgh.

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  1. apex-nf apex-nf Public

    APEX: Automated Protein EXpression in E. coli

    Python 2

  2. baghera baghera Public

    Bayesian Gene Heritability Analysis from GWAS summary statistics

    Python 9

  3. cubseq-nf cubseq-nf Public

    CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

    R 2 1

  4. pygna pygna Public

    A Python package for gene network analysis

    Python 32 6

  5. mooda mooda Public

    A DNA design and assembly method based on multi-objective optimization.

    Python 6

  6. cookiecutter-workflow-nf cookiecutter-workflow-nf Public

    A standardized directory structure to build workflows using Nextflow.

    Dockerfile 4

Repositories

Showing 10 of 27 repositories
  • cookiecutter-workflow-nf Public

    A standardized directory structure to build workflows using Nextflow.

    stracquadaniolab/cookiecutter-workflow-nf’s past year of commit activity
    Dockerfile 4 0 0 0 Updated Aug 19, 2024
  • apex-nf Public

    APEX: Automated Protein EXpression in E. coli

    stracquadaniolab/apex-nf’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Aug 13, 2024
  • prevent-nf Public

    PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion

    stracquadaniolab/prevent-nf’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Jul 4, 2024
  • stracquadaniolab/quickmd-nf’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 7, 2024
  • openmm-nf Public

    Workflow to measure protein mutant stability with respect to the wild type

    stracquadaniolab/openmm-nf’s past year of commit activity
    Python 0 0 0 0 Updated May 13, 2024
  • mooda Public

    A DNA design and assembly method based on multi-objective optimization.

    stracquadaniolab/mooda’s past year of commit activity
    Python 6 MIT 0 0 2 Updated May 3, 2024
  • docker-latex Public

    A full Tex image

    stracquadaniolab/docker-latex’s past year of commit activity
    Shell 0 1 0 0 Updated Apr 25, 2024
  • cubseq-nf Public

    CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

    stracquadaniolab/cubseq-nf’s past year of commit activity
    R 2 MIT 1 0 0 Updated Mar 29, 2024
  • scilenzio-yeast-nf Public

    Analysis of transcriptional repression in synthetic yeast chromosome using RNA-seq data (post-sc2.0).

    stracquadaniolab/scilenzio-yeast-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 14, 2024
  • quick-fold-nf Public

    A Nextflow workflow for protein structure prediction.

    stracquadaniolab/quick-fold-nf’s past year of commit activity
    Python 0 0 0 0 Updated Oct 23, 2023

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