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Straight Lab

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  1. cask cask Public

    Classification of Ambivalent Sequences using K-mers

    Python 3

  2. charseq_dynamics_paper charseq_dynamics_paper Public

    Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"

    HTML 3

  3. flypipe flypipe Public

    Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts

    Shell 1 1

  4. charseq-pipelines charseq-pipelines Public

    Pipelines to process raw ChAR-seq data

    Jupyter Notebook 1 1

  5. chartools chartools Public

    Suite of tools to work with ChAR-seq data

    Python 1

  6. xenla-cen-dna-paper xenla-cen-dna-paper Public

    snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA

    Python

Repositories

Showing 9 of 9 repositories
  • compgenomics_minicourse Public

    Computational Genomics Minicourse

    straightlab/compgenomics_minicourse’s past year of commit activity
    Python 0 1 0 0 Updated Sep 6, 2024
  • chartools Public

    Suite of tools to work with ChAR-seq data

    straightlab/chartools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 30, 2024
  • charseq-pipelines Public

    Pipelines to process raw ChAR-seq data

    straightlab/charseq-pipelines’s past year of commit activity
    Jupyter Notebook 1 MIT 1 1 0 Updated Jan 30, 2024
  • charseq_dynamics_paper Public

    Companion code for paper "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions"

    straightlab/charseq_dynamics_paper’s past year of commit activity
    HTML 3 0 0 0 Updated Nov 1, 2023
  • tagtools Public

    Multimapper aware annotation of alignments

    straightlab/tagtools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2023
  • DiMeLo Public

    Scripts for analysis of DiMeLo data from in vitro and in situ DiMeLo-seq

    straightlab/DiMeLo’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 7, 2023
  • cask Public

    Classification of Ambivalent Sequences using K-mers

    straightlab/cask’s past year of commit activity
    Python 3 GPL-3.0 0 1 0 Updated Oct 25, 2021
  • xenla-cen-dna-paper Public

    snakemake pipeline for k-mer analysis of Xenopus laevis centromeric DNA

    straightlab/xenla-cen-dna-paper’s past year of commit activity
    Python 0 0 2 0 Updated Jun 25, 2020
  • flypipe Public

    Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts

    straightlab/flypipe’s past year of commit activity
    Shell 1 GPL-3.0 1 2 0 Updated May 1, 2018

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