Skip to content

Commit

Permalink
february 2021 dataset
Browse files Browse the repository at this point in the history
  • Loading branch information
@stuchalk
stuchalk committed Apr 18, 2021
1 parent 57c0d65 commit 8fcab30
Show file tree
Hide file tree
Showing 29 changed files with 28 additions and 3 deletions.
3 changes: 0 additions & 3 deletions .gitignore
View file
Original file line number Diff line number Diff line change
Expand Up @@ -87,6 +87,3 @@ fabric.properties

# coverage report
.coverage

# temp remove 202102
data/202102/
1 change: 1 addition & 0 deletions data/202102/sjc020121.jsonld
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"@context": ["https://stuchalk.github.io/scidata/contexts/scidata_activity.jsonld", "https://stuchalk.github.io/scidata/contexts/scidata.jsonld", "https://stuchalk.github.io/scidata/contexts/scidata_subject.jsonld", {"sdo": "https://stuchalk.github.io/scidata/ontology/scidata.owl#", "w3i": "https://w3id.org/skgo/modsci#", "qudt": "http://qudt.org/vocab/unit/", "obo": "http://purl.obolibrary.org/obo/", "dc": "http://purl.org/dc/terms/", "xsd": "http://www.w3.org/2001/XMLSchema#", "loinc": "https://loinc.org/", "ss": "http://semanticscience.org/resource/", "afp": "http://purl.allotrope.org/ontologies/process#"}, {"@base": "https://github.com/stuchalk/fair-health-data/data/sjc020121/"}], "@id": "dataset32", "generatedAt": "04-07-21 19:10:20", "version": "1", "@graph": {"@id": "https://github.com/stuchalk/fair-health-data/data/sjc020121/", "@type": "sdo:scidataFramework", "uid": "scidata:fair:sjc020121", "title": "Health data for Stuart J. Chalk from February 01, 2021", "authors": [{"@id": "author/1/", "@type": "dc:creator", "name": "Stuart J. Chalk", "email": "stuartjchalk@gmail.com", "orcid": "0000-0002-0703-7776"}], "description": "Record of body temperature, weight, resting heart rate, VO2 max and physical activity on 02/01/2021", "publisher": "Stuart J. Chalk", "keywords": ["VO2 max", "body temperature", "body weight", "exercise", "resting heartrate"], "permalink": "https://github.com/stuchalk/fair-health-data/data/sjc020121/.jsonld", "toc": ["dc:creator", "dc:rights", "dc:source", "obo:NCIT_C43431", "sdo:condition", "sdo:datagroup", "sdo:datapoint", "sdo:dataset", "sdo:measurement", "sdo:methodology", "sdo:numericvalue", "sdo:procedure", "sdo:resource", "sdo:scidataFramework", "sdo:scientificData", "sdo:subject", "sdo:system"], "ids": ["afp:AFP_0000503", "loinc:18688-2", "loinc:18690-8", "loinc:40443-4", "loinc:55411-3", "loinc:60832-3", "loinc:93817-5", "loinc:93825-8", "loinc:94122-9", "obo:NCBITaxon_9606", "obo:NCIT_C43431", "obo:NCIT_C94737", "obo:OMIT_0028052", "qudt:BEAT-PER-MIN", "qudt:DEG_F", "qudt:KiloCAL", "qudt:LB", "qudt:MIN", "qudt:MI_US", "qudt:MilliL-PER-KiloGM-MIN", "ss:SIO_000391", "w3i:Health"], "scidata": {"@id": "scidata/", "@type": "sdo:scientificData", "discipline": "w3i:Health", "methodology": {"@id": "methodology/", "@type": "sdo:methodology", "evaluation": "experimental", "aspects": [{"@id": "measurement/1/", "@type": "sdo:measurement", "scope": ["resource/1/", "procedure/1/"], "technique": "thermometry", "techniqueref": "obo:OMIT_0028052"}, {"@id": "measurement/2/", "@type": "sdo:measurement", "scope": "resource/2/", "technique": "weighing", "techniqueref": "afp:AFP_0000503"}, {"@id": "measurement/3/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "optical heart rate monitoring"}, {"@id": "measurement/4/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "geolocation mapping"}, {"@id": "measurement/5/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "timing", "techniqueref": "ss:SIO_000391"}, {"@id": "resource/1/", "@type": "sdo:resource", "type": "digital infrared thermometer", "name": "iProven DMT-489", "vendor": "iProven"}, {"@id": "resource/2/", "@type": "sdo:resource", "type": "digital scale", "name": "Body Cardio", "vendor": "Withings"}, {"@id": "resource/3/", "@type": "sdo:resource", "name": "Forerunner 245", "type": "digital running watch", "vendor": "Garmin", "software": "Version 5.50", "accessory": "Garmin Running Dynamics Pod"}, {"@id": "procedure/1/", "@type": "sdo:procedure", "description": "Measurement of body temperature was made by turning on the infrared thermomemter, verifying there were no errors, and taking a measurement as follows. First, the 'head' button was depressed and held down while moving the device across the forehead from left to right at a distance of ~1 cm away. The 'head' button was then released. The reading on the display was recorded in the Notes app on an iPhone."}, {"@id": "activity/1/", "@type": "obo:NCIT_C43431", "exercise": "road running", "exerciseref": "obo:NCIT_C94737", "url": "https://connect.garmin.com/modern/activity/6201827114"}]}, "system": {"@id": "system/", "@type": "sdo:system", "facets": [{"@id": "subject/1/", "@type": "sdo:subject", "species": "homo sapien", "speciesref": "obo:NCBITaxon_9606", "gender": "male", "ethnicity": "caucasian", "nationality": "english"}, {"@id": "condition/1/", "@type": "sdo:condition", "quantity": "temperature", "property": "room temperature", "propertyref": "loinc:60832-3", "value": {"@id": "condition/1/numericvalue/1/", "@type": "sdo:numericvalue", "number": "71", "unit": "qudt:DEG_F"}}]}, "dataset": {"@id": "dataset/", "@type": "sdo:dataset", "scope": "specimen/1/", "datapoint": [{"@id": "datapoint/1/", "@type": "sdo:datapoint", "source": ["measurement/2/", "measurement/3/", "measurement/4/"], "property": "VO2 max", "propertyref": "loinc:94122-9", "activity": "activity/1/", "textstring": {"@id": "datapoint/1/numericvalue/1/", "@type": "sdo:numericvalue", "value": "50", "unit": "qudt:MilliL-PER-KiloGM-MIN"}}, {"@id": "datapoint/2/", "@type": "sdo:datapoint", "source": ["measurement/3/", "measurement/4/"], "property": "calories burned", "propertyref": "loinc:93825-8", "value": {"@id": "datapoint/2/numericvalue/1/", "@type": "sdo:numericvalue", "number": "354", "unit": "qudt:KiloCAL"}}, {"@id": "datapoint/3/", "@type": "sdo:datapoint", "source": "measurement/4/", "property": "running distance", "propertyref": "loinc:93817-5", "value": {"@id": "datapoint/3/numericvalue/1/", "@type": "sdo:numericvalue", "number": "3.23", "unit": "qudt:MI_US"}}, {"@id": "datapoint/4/", "@type": "sdo:datapoint", "source": "measurement/5/", "property": "exercise duration", "propertyref": "loinc:55411-3", "value": {"@id": "datapoint/4/numericvalue/1/", "@type": "sdo:numericvalue", "number": 25.97, "unit": "qudt:MIN"}}, {"@id": "datapoint/5/", "@type": "sdo:datapoint", "source": "measurement/1/", "property": "body temperature", "propertyref": "loinc:18688-2", "conditions": "condition/1/", "value": {"@id": "datapoint/5/numericvalue/1/", "@type": "sdo:numericvalue", "number": "96.6", "unit": "qudt:DEG_F"}}, {"@id": "datapoint/6/", "@type": "sdo:datapoint", "source": "measurement/2/", "property": "body weight", "propertyref": "loinc:18690-8", "textstring": {"@id": "datapoint/6/numericvalue/1/", "@type": "sdo:numericvalue", "number": "183.5", "unit": "qudt:LB"}}, {"@id": "datapoint/7/", "@type": "sdo:datapoint", "source": "measurement/3/", "property": "resting heart rate", "propertyref": "loinc:40443-4", "number": {"@id": "datapoint/7/numericvalue/1/", "@type": "sdo:numericvalue", "value": "42", "unit": "qudt:BEAT-PER-MIN"}}], "datagroup": [{"@id": "datagroup/1/", "@type": "sdo:datagroup", "source": ["resource/3/", "event/1/"], "datapoints": ["datapoint/1/", "datapoint/2/", "datapoint/3/", "datapoint/4/"]}]}}, "sources": [{"@id": "source/1/", "@type": "dc:source", "citation": "Chalk Health Study 2021", "url": "https://github.com/stuchalk/fair-health-data"}], "rights": [{"@id": "rights/1/", "@type": "dc:rights", "holder": "Stuart J. Chalk", "license": "https://creativecommons.org/licenses/by-nc-nd/4.0/"}]}}
1 change: 1 addition & 0 deletions data/202102/sjc020221.jsonld
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"@context": ["https://stuchalk.github.io/scidata/contexts/scidata_activity.jsonld", "https://stuchalk.github.io/scidata/contexts/scidata.jsonld", "https://stuchalk.github.io/scidata/contexts/scidata_subject.jsonld", {"sdo": "https://stuchalk.github.io/scidata/ontology/scidata.owl#", "w3i": "https://w3id.org/skgo/modsci#", "qudt": "http://qudt.org/vocab/unit/", "obo": "http://purl.obolibrary.org/obo/", "dc": "http://purl.org/dc/terms/", "xsd": "http://www.w3.org/2001/XMLSchema#", "loinc": "https://loinc.org/", "ss": "http://semanticscience.org/resource/", "afp": "http://purl.allotrope.org/ontologies/process#"}, {"@base": "https://github.com/stuchalk/fair-health-data/data/sjc020221/"}], "@id": "dataset33", "generatedAt": "04-07-21 19:10:20", "version": "1", "@graph": {"@id": "https://github.com/stuchalk/fair-health-data/data/sjc020221/", "@type": "sdo:scidataFramework", "uid": "scidata:fair:sjc020221", "title": "Health data for Stuart J. Chalk from February 02, 2021", "authors": [{"@id": "author/1/", "@type": "dc:creator", "name": "Stuart J. Chalk", "email": "stuartjchalk@gmail.com", "orcid": "0000-0002-0703-7776"}], "description": "Record of body temperature, weight, resting heart rate, VO2 max and physical activity on 02/02/2021", "publisher": "Stuart J. Chalk", "keywords": ["VO2 max", "body temperature", "body weight", "exercise", "resting heartrate"], "permalink": "https://github.com/stuchalk/fair-health-data/data/sjc020221/.jsonld", "toc": ["dc:creator", "dc:rights", "dc:source", "obo:NCIT_C43431", "sdo:condition", "sdo:datagroup", "sdo:datapoint", "sdo:dataset", "sdo:measurement", "sdo:methodology", "sdo:numericvalue", "sdo:procedure", "sdo:resource", "sdo:scidataFramework", "sdo:scientificData", "sdo:subject", "sdo:system"], "ids": ["afp:AFP_0000503", "loinc:18688-2", "loinc:18690-8", "loinc:40443-4", "loinc:55411-3", "loinc:60832-3", "loinc:93817-5", "loinc:93825-8", "loinc:94122-9", "obo:NCBITaxon_9606", "obo:NCIT_C43431", "obo:NCIT_C94737", "obo:OMIT_0028052", "qudt:BEAT-PER-MIN", "qudt:DEG_F", "qudt:KiloCAL", "qudt:LB", "qudt:MIN", "qudt:MI_US", "qudt:MilliL-PER-KiloGM-MIN", "ss:SIO_000391", "w3i:Health"], "scidata": {"@id": "scidata/", "@type": "sdo:scientificData", "discipline": "w3i:Health", "methodology": {"@id": "methodology/", "@type": "sdo:methodology", "evaluation": "experimental", "aspects": [{"@id": "measurement/1/", "@type": "sdo:measurement", "scope": ["resource/1/", "procedure/1/"], "technique": "thermometry", "techniqueref": "obo:OMIT_0028052"}, {"@id": "measurement/2/", "@type": "sdo:measurement", "scope": "resource/2/", "technique": "weighing", "techniqueref": "afp:AFP_0000503"}, {"@id": "measurement/3/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "optical heart rate monitoring"}, {"@id": "measurement/4/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "geolocation mapping"}, {"@id": "measurement/5/", "@type": "sdo:measurement", "scope": ["resource/3/", "activity/1/"], "technique": "timing", "techniqueref": "ss:SIO_000391"}, {"@id": "resource/1/", "@type": "sdo:resource", "type": "digital infrared thermometer", "name": "iProven DMT-489", "vendor": "iProven"}, {"@id": "resource/2/", "@type": "sdo:resource", "type": "digital scale", "name": "Body Cardio", "vendor": "Withings"}, {"@id": "resource/3/", "@type": "sdo:resource", "name": "Forerunner 245", "type": "digital running watch", "vendor": "Garmin", "software": "Version 5.50", "accessory": "Garmin Running Dynamics Pod"}, {"@id": "procedure/1/", "@type": "sdo:procedure", "description": "Measurement of body temperature was made by turning on the infrared thermomemter, verifying there were no errors, and taking a measurement as follows. First, the 'head' button was depressed and held down while moving the device across the forehead from left to right at a distance of ~1 cm away. The 'head' button was then released. The reading on the display was recorded in the Notes app on an iPhone."}, {"@id": "activity/1/", "@type": "obo:NCIT_C43431", "exercise": "road running", "exerciseref": "obo:NCIT_C94737", "url": "https://connect.garmin.com/modern/activity/6207298753"}]}, "system": {"@id": "system/", "@type": "sdo:system", "facets": [{"@id": "subject/1/", "@type": "sdo:subject", "species": "homo sapien", "speciesref": "obo:NCBITaxon_9606", "gender": "male", "ethnicity": "caucasian", "nationality": "english"}, {"@id": "condition/1/", "@type": "sdo:condition", "quantity": "temperature", "property": "room temperature", "propertyref": "loinc:60832-3", "value": {"@id": "condition/1/numericvalue/1/", "@type": "sdo:numericvalue", "number": "72", "unit": "qudt:DEG_F"}}]}, "dataset": {"@id": "dataset/", "@type": "sdo:dataset", "scope": "specimen/1/", "datapoint": [{"@id": "datapoint/1/", "@type": "sdo:datapoint", "source": ["measurement/2/", "measurement/3/", "measurement/4/"], "property": "VO2 max", "propertyref": "loinc:94122-9", "activity": "activity/1/", "textstring": {"@id": "datapoint/1/numericvalue/1/", "@type": "sdo:numericvalue", "value": "50", "unit": "qudt:MilliL-PER-KiloGM-MIN"}}, {"@id": "datapoint/2/", "@type": "sdo:datapoint", "source": ["measurement/3/", "measurement/4/"], "property": "calories burned", "propertyref": "loinc:93825-8", "value": {"@id": "datapoint/2/numericvalue/1/", "@type": "sdo:numericvalue", "number": "263", "unit": "qudt:KiloCAL"}}, {"@id": "datapoint/3/", "@type": "sdo:datapoint", "source": "measurement/4/", "property": "running distance", "propertyref": "loinc:93817-5", "value": {"@id": "datapoint/3/numericvalue/1/", "@type": "sdo:numericvalue", "number": "2.25", "unit": "qudt:MI_US"}}, {"@id": "datapoint/4/", "@type": "sdo:datapoint", "source": "measurement/5/", "property": "exercise duration", "propertyref": "loinc:55411-3", "value": {"@id": "datapoint/4/numericvalue/1/", "@type": "sdo:numericvalue", "number": 17.95, "unit": "qudt:MIN"}}, {"@id": "datapoint/5/", "@type": "sdo:datapoint", "source": "measurement/1/", "property": "body temperature", "propertyref": "loinc:18688-2", "conditions": "condition/1/", "value": {"@id": "datapoint/5/numericvalue/1/", "@type": "sdo:numericvalue", "number": "96.3", "unit": "qudt:DEG_F"}}, {"@id": "datapoint/6/", "@type": "sdo:datapoint", "source": "measurement/2/", "property": "body weight", "propertyref": "loinc:18690-8", "textstring": {"@id": "datapoint/6/numericvalue/1/", "@type": "sdo:numericvalue", "number": "183.0", "unit": "qudt:LB"}}, {"@id": "datapoint/7/", "@type": "sdo:datapoint", "source": "measurement/3/", "property": "resting heart rate", "propertyref": "loinc:40443-4", "number": {"@id": "datapoint/7/numericvalue/1/", "@type": "sdo:numericvalue", "value": "44", "unit": "qudt:BEAT-PER-MIN"}}], "datagroup": [{"@id": "datagroup/1/", "@type": "sdo:datagroup", "source": ["resource/3/", "event/1/"], "datapoints": ["datapoint/1/", "datapoint/2/", "datapoint/3/", "datapoint/4/"]}]}}, "sources": [{"@id": "source/1/", "@type": "dc:source", "citation": "Chalk Health Study 2021", "url": "https://github.com/stuchalk/fair-health-data"}], "rights": [{"@id": "rights/1/", "@type": "dc:rights", "holder": "Stuart J. Chalk", "license": "https://creativecommons.org/licenses/by-nc-nd/4.0/"}]}}
Loading

0 comments on commit 8fcab30

Please sign in to comment.