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Arriba v2.5.0

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@suhrig suhrig released this 26 Mar 12:41
  • migrated documentation from ReadTheDocs to GitHub wiki pages
  • improved transcript selection (prioritize longest coding sequence instead of longest overall sequence)
  • new parameter --plotPanels to enable/disable panels from the fusion figures
  • compatibility with STARlong
  • ~30% speedup of BAM/CRAM file reading with new multi-threading parameter -@ 2
  • dropped a few "suppressed" (=obsolete) viral genomes (requires a rebuilt of the STAR index when switching from RefSeq_viral_genomes_v2.4.0.fa.gz to RefSeq_viral_genomes_v2.5.0.fa.gz)
  • fix macOS compilation issue
  • fix a few rare segmentation faults
  • several enhancements to the VCF conversion script