Tutorial and developer docs at https://biocypher.org. For a quickstart into your own pipeline, you can refer to our project template.
This is the development repository for BioCypher, our proposal for a unifying framework to create knowledge graph databases for systems biomedicine. For an overview, usage notes, and a tutorial, read the docs here.
BioCypher is currently in prototype stage. Installation instructions can be found here.
Exemplary usage of BioCypher to build a graph database is shown in various adapters we have created. For instance, interested users can refer to the migration of the Clinical Knowledge Graph, or the adapters created for the CROssBAR project. As the project evolves, more of these examples will be directly included in the documentation.
We are very happy about contributions from the community, large and small! If you would like to contribute to BioCypher development, please refer to our contribution guidelines. :)
This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 965193 for DECIDER and No 116030 for TransQST.
