final simulation engine optimisation

sybila · May 24, 2017 · 2775b6f · 2775b6f
1 parent 275d41e
commit 2775b6f
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/...ion/src/main/java/org/sybila/parasim/application/model/TrajectoryAnalysisComputation.java b/...ion/src/main/java/org/sybila/parasim/application/model/TrajectoryAnalysisComputation.java
@@ -107,7 +107,7 @@ public Void call() throws Exception {
         //TODO fix drawing and remove this condition
         boolean octaveAvailable = false;
         try {
-            //Checking if octave is available on this machine
+            //Checking if octave is available on this machine to analyze the plot
             Process p = Runtime.getRuntime().exec(new String[]{"octave", "--version"});
             p.waitFor();
             if (p.exitValue() == 0) {

diff --git a/model/ode/src/main/java/org/sybila/parasim/model/ode/SimpleOdeSystem.java b/model/ode/src/main/java/org/sybila/parasim/model/ode/SimpleOdeSystem.java
@@ -56,10 +56,16 @@ public class SimpleOdeSystem implements OdeSystem {
      */
     @Deprecated
     public SimpleOdeSystem(Collection<OdeSystemVariable> variables, Collection<VariableValue> initialVariableValues, Collection<ParameterValue> parameterValues) {
-        //TODO Vojta - notUrgent - Safely remove this constructor
         this(variables, initialVariableValues, parameterValues, null);
     }
 
+    /**
+     * Default constructor, which allows creation of ODESystem with original SBML model.
+     * @param variables
+     * @param initialVariableValues
+     * @param parameterValues
+     * @param originalModel original SBML model
+     */
     public SimpleOdeSystem(Collection<OdeSystemVariable> variables, Collection<VariableValue> initialVariableValues, Collection<ParameterValue> parameterValues, Model originalModel) {
         this.originalModel = originalModel;
         if (variables == null) {