make gradle project executable

application/build.gradle

@@ -1,3 +1,7 @@
+apply plugin: 'application'
+
+mainClassName = 'org.sybila.parasim.application.Main'
+
 group = 'org.sybila.parasim.application'
 
 dependencies {
@@ -15,4 +19,14 @@ dependencies {
 	compile project(':extensions:result-export-impl')
 	compile project(':extensions:project-manager-simple')
 	compile project(':extensions:progress-logger')
+}
+
+distributions {
+	main {
+		baseName = 'parasim'
+	}
+}
+
+startScripts {
+	applicationName = 'parasim'
 }

build.gradle

@@ -22,6 +22,10 @@ allprojects {
         maven { url 'http://www.ebi.ac.uk/~maven/m2repo' }
         // javaoctave
         maven { url 'https://kenai.com/svn/javaoctave~maven-repository/maven2/' }
+        /*
+            Note for IDEA users - the IDE can't find javaoctave when sychronizing with gradle. You have to download
+            it from url above and include it in the project manually
+         */
     }
 
     //global configuration
@@ -36,7 +40,7 @@ allprojects {
         testCompile group: 'junit', name: 'junit', version: '4.11'  
         testCompile 'org.testng:testng:6.9.12'
         compile 'net.jcip:jcip-annotations:1.0'
-        compile 'javassist:javassist:3.12.1.GA'
+        compile 'org.javassist:javassist:3.22.0-CR1'
         compile 'org.slf4j:slf4j-log4j12:1.7.21'
         compile 'org.apache.commons:commons-lang3:3.5'
     }