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@talkowski-lab

Talkowski Laboratory

Talkowski Laboratory at Massachusetts General Hospital & The Broad Institute

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  1. gnomad-sv-pipeline gnomad-sv-pipeline Public archive

    Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)

    R 36 14

  2. svtk svtk Public archive

    Python 35 12

  3. SV-Adjudicator SV-Adjudicator Public

    Python 25 5

  4. rCNV2 rCNV2 Public

    Aggregation and analyses of rare CNVs across diseases

    R 14 3

  5. Holmes Holmes Public

    Pipeline for structural variation detection from liWGS libraries

    Shell 5

  6. variant-interpretation variant-interpretation Public

    WDL 4 7

Repositories

Showing 10 of 35 repositories
  • talkowski-lab/clinical-filtering’s past year of commit activity
    Python 0 0 0 0 Updated Mar 4, 2025
  • talkowski-lab/variant-interpretation’s past year of commit activity
    WDL 4 7 0 0 Updated Mar 3, 2025
  • talkowski-lab/denovo-snv-indels’s past year of commit activity
    WDL 0 0 0 0 Updated Feb 21, 2025
  • annotations Public
    talkowski-lab/annotations’s past year of commit activity
    WDL 0 1 0 0 Updated Feb 19, 2025
  • gCNV-analysis-tools Public

    Analysis tools for gCNV

    talkowski-lab/gCNV-analysis-tools’s past year of commit activity
    R 0 1 3 0 Updated Feb 13, 2025
  • dsmap Public
    talkowski-lab/dsmap’s past year of commit activity
    Shell 0 MIT 1 2 0 Updated Feb 5, 2025
  • athena Public

    Toolkit for structural variation mutation rates and dosage sensitivity

    talkowski-lab/athena’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 4, 2025
  • preprocessing Public
    talkowski-lab/preprocessing’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 31, 2025
  • gatk-sv-internal Public

    Miscellaneous workflows and scripts for GATK-SV

    talkowski-lab/gatk-sv-internal’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 21, 2025
  • outlier-exclusion Public

    Workflows for filtering gATK-SV callsets

    talkowski-lab/outlier-exclusion’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 15, 2025

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