2.0.3

tdayris · Jan 31, 2024 · 7d36871 · 7d36871
1 parent 7748cc8
commit 7d36871
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# 2.0.3
+
+## Fix
+
+* Type error on missing effective genome size
+
 # 2.0.2
 
 ## Features

diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -152,7 +152,7 @@ def get_effective_genome_size(
 
 def get_read_length(
     wildcards: snakemake.io.Wildcards, samples: pandas.DataFrame = samples
-) -> str:
+) -> int:
     """
     Return read length
 
@@ -161,10 +161,10 @@ def get_read_length(
     wildcards (snakemake.io.Wildcards): Required for snakemake unpacking function
     samples   (pandas.DataFrame)      : Samples description and their file paths
 
-    Return    (str): Read length (default "100")
+    Return    (int): Read length (default 100)
     """
     sample_data: dict[str, str | None] = get_sample_information(wildcards, samples)
-    return str(sample_data.get("read_length", 100))
+    return int(sample_data.get("read_length", 100))
 
 
 def get_blacklist(