imodmodel

Read and write IMOD model files as pandas dataframes in Python.

Usage

Read IMOD models as pandas DataFrame

import imodmodel

df = imodmodel.read('my_model_file.mod')

In [3]: df.head()
Out[3]: 
   object_id  contour_id          x          y     z
0          0           0  64.333336  64.666664  80.0
1          0           0  47.000000  77.333336  80.0
2          0           0  51.333332  45.666668  80.0
3          0           0  87.333336  49.666668  80.0
4          0           0  76.000000  82.000000  80.0

Write IMOD models from a pandas DataFrame

imodmodel.write(df, 'my_new_modelfile.mod')

For more advanced use cases we also provide an object-based API. Please consult our Documentation.

Installation

imodmodel can be installed from the Python Package Index (PyPI)

pip install imodmodel

We recommend installing into a clean virtual environment.