Update README.md #14
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y graphviz | |
| - name: Make script executable | |
| run: chmod +x ./bin/fastq-peak.sh | |
| - name: Run fastq-peak script | |
| id: run_script | |
| run: ./bin/fastq-peak.sh ./data/sample.fastq | |
| - name: Verify output | |
| run: | | |
| EXPECTED_OUTPUT="Processing FASTQ file: ./data/sample.fastq\nNumber of reads in ./data/sample.fastq: 2\nGC content in ./data/sample.fastq: 50%" | |
| ACTUAL_OUTPUT=$(./bin/fastq-peak.sh ./data/sample.fastq) | |
| if [[ "$ACTUAL_OUTPUT" != "$EXPECTED_OUTPUT" ]]; then | |
| echo "Output did not match expected result." | |
| echo "Expected: $EXPECTED_OUTPUT" | |
| echo "Got: $ACTUAL_OUTPUT" | |
| exit 1 | |
| fi | |
| shell: bash |