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Python 26 3 Updated Mar 21, 2019

Transformer-based model to predict genome-wide chromosome spatial position

Python 7 Updated May 26, 2023

Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq

Jupyter Notebook 11 Updated Mar 27, 2024

spatial transcriptome, single cell

Jupyter Notebook 67 7 Updated Mar 18, 2023

hypergraph representation learning, graph neural network

Python 94 23 Updated May 10, 2024

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

Jupyter Notebook 19 7 Updated Sep 12, 2023
Jupyter Notebook 6 1 Updated Feb 14, 2025

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

Jupyter Notebook 85 13 Updated Oct 1, 2024
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