Graph updates

[topepo]

• Static plots for BO and SA
• Color change for microarray plot black and white versions #212
• Small changes for racing plot

All of these plots have figure captions.

[topepo]

The hash for the SA results appears to have changed.

Locally, I get the same iteration results at the website:

#> Optimizing roc_auc
#> Initial best: 0.86627 
#>  1 ♥ new best           roc_auc=0.87293   (+/-0.007638) 
#>  2 ♥ new best           roc_auc=0.89656    (+/-0.006779) 
#>  3 ─ discard suboptimal roc_auc=0.88247    (+/-0.00731) 
#>  4 ─ discard suboptimal roc_auc=0.8812  (+/-0.006122) 
#>  5 ◯ accept suboptimal  roc_auc=0.88226    (+/-0.007343)

website:

#> Optimizing roc_auc
#> Initial best: 0.86627
#>  1 ♥ new best           roc_auc=0.87293  (+/-0.007638)
#>  2 ♥ new best           roc_auc=0.89656  (+/-0.006779)
#>  3 ─ discard suboptimal roc_auc=0.88247  (+/-0.00731)
#>  4 ─ discard suboptimal roc_auc=0.8812   (+/-0.006122)
#>  5 ◯ accept suboptimal  roc_auc=0.88226  (+/-0.007343)

Perhaps something else in the object has changed. @juliasilge Can you send your results?

[juliasilge]

I do see the error if I run locally:

> verify_consistent_bo(svm_bo)
Error in `verify_consistent_bo()`:
! These Bayesian optimization results don't match the previous values.
Run `rlang::last_error()` to see where the error occurred.

I have the same results for the first five iterations:

Optimizing roc_auc
Initial best: 0.86627
 1 ♥ new best           roc_auc=0.87293	(+/-0.007638)
 2 ♥ new best           roc_auc=0.89907	(+/-0.007041)
 3 ─ discard suboptimal roc_auc=0.88247	(+/-0.00731)
 4 ─ discard suboptimal roc_auc=0.8812	(+/-0.006122)
 5 ◯ accept suboptimal  roc_auc=0.88226	(+/-0.007343)

But the last ten are different:

40 ◯ accept suboptimal  roc_auc=0.89	(+/-0.005141)
41 ◯ accept suboptimal  roc_auc=0.8877	(+/-0.007133)
42 + better suboptimal  roc_auc=0.89898	(+/-0.00658)
43 ◯ accept suboptimal  roc_auc=0.89895	(+/-0.006654)
44 ─ discard suboptimal roc_auc=0.87502	(+/-0.007454)
45 ─ discard suboptimal roc_auc=0.88489	(+/-0.007197)
46 ◯ accept suboptimal  roc_auc=0.88445	(+/-0.007064)
47 x restart from best  roc_auc=0.87697	(+/-0.007277)
48 ─ discard suboptimal roc_auc=0.84918	(+/-0.008598)
49 ─ discard suboptimal roc_auc=0.88926	(+/-0.005202)
50 ─ discard suboptimal roc_auc=0.87209	(+/-0.006013)

[topepo]

Changes moved to #231 and 9a04f7e

[github-actions]

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