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merge Development onto main #40

Merged
merged 231 commits into from
Aug 6, 2024
Merged

merge Development onto main #40

merged 231 commits into from
Aug 6, 2024

Commits on Feb 13, 2024

  1. After making circular fft, before the right integral

    @amirDahari1
    amirDahari1 committed Feb 13, 2024
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Commits on Feb 15, 2024

  1. changed name of validation to stat_gen which is more appropriate

    @amirDahari1
    amirDahari1 committed Feb 15, 2024
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  2. renaming again and starting to get ready for size error

    @amirDahari1
    amirDahari1 committed Feb 15, 2024
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  3. the new validation.py file

    @amirDahari1
    amirDahari1 committed Feb 15, 2024
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  4. microlib statistics is a better name

    @amirDahari1
    amirDahari1 committed Feb 15, 2024
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  5. before debugging microlib_statistics.py many sizes

    @amirDahari1
    amirDahari1 committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. prediction for different sizes run ok

    @amirDahari1
    amirDahari1 committed Feb 16, 2024
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Commits on Feb 19, 2024

  1. finished error by size code, before plot

    @amirDahari1
    amirDahari1 committed Feb 19, 2024
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Commits on Feb 21, 2024

  1. inc. json files, starting to analyse error by size

    @amirDahari1
    amirDahari1 committed Feb 21, 2024
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Commits on Feb 22, 2024

  1. many runs for function fit or error size

    @amirDahari1
    amirDahari1 committed Feb 22, 2024
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  2. prediction error file

    @amirDahari1
    amirDahari1 committed Feb 22, 2024
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Commits on Feb 26, 2024

  1. changed the structure of the json statistics

    @amirDahari1
    amirDahari1 committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. code for errors by size is mainly done

    @amirDahari1
    amirDahari1 committed Feb 27, 2024
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Commits on Mar 14, 2024

  1. variance proof with circles model

    @amirDahari1
    amirDahari1 committed Mar 14, 2024
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Commits on Apr 24, 2024

  1. latest changes

    @amirDahari1
    amirDahari1 committed Apr 24, 2024
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Commits on Apr 26, 2024

  1. saving the results so far

    @amirDahari1
    amirDahari1 committed Apr 26, 2024
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  2. saving data

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    amirDahari1 committed Apr 26, 2024
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Commits on Apr 28, 2024

  1. updated data

    @amirDahari1
    amirDahari1 committed Apr 28, 2024
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Commits on May 1, 2024

  1. new

    @amirDahari1
    amirDahari1 committed May 1, 2024
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Commits on May 15, 2024

  1. all data working repo

    @amirDahari1
    amirDahari1 committed May 15, 2024
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  2. 3d stat. analysis done, need 1st run of pred and last 3

    @amirDahari1
    amirDahari1 committed May 15, 2024
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Commits on May 17, 2024

  1. SI fig1 and finished json file (10 runs)

    @amirDahari1
    amirDahari1 committed May 17, 2024
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Commits on May 21, 2024

  1. model error fig

    @amirDahari1
    amirDahari1 committed May 21, 2024
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  2. changing the figures to be with circles

    @amirDahari1
    amirDahari1 committed May 21, 2024
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Commits on May 29, 2024

  1. finished the circles figure - I like it!

    @amirDahari1
    amirDahari1 committed May 29, 2024
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Commits on May 30, 2024

  1. after inserting 3d params, before testing the main function

    @amirDahari1
    amirDahari1 committed May 30, 2024
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Commits on Jun 3, 2024

  1. started validation with porespy

    @amirDahari1
    amirDahari1 committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. fixed and verified util function for error prediction, plus continued… 

    … on validation
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Commits on Jun 5, 2024

  1. before stat. analysis in validation.py

    @amirDahari1
    amirDahari1 committed Jun 5, 2024
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  2. finished validation for running, and fixed util for one-tail error

    @amirDahari1
    amirDahari1 committed Jun 5, 2024
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Commits on Jun 17, 2024

  1. updated from mlrig1

    @amirDahari1
    amirDahari1 committed Jun 17, 2024
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  2. normal hist file

    @amirDahari1
    amirDahari1 committed Jun 17, 2024
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  3. predicting the interval with a sum of normal distributions

    @amirDahari1
    amirDahari1 committed Jun 17, 2024
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  4. got to a good place with interval prediction, needs to make it into o… 

    …ne figure
    @amirDahari1
    amirDahari1 committed Jun 17, 2024
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Commits on Jun 20, 2024

  1. added react/ts/etc boilerplate

    rmdocherty committed Jun 20, 2024
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  2. updated package json to get it to actually work

    rmdocherty committed Jun 20, 2024
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  3. updated app

    rmdocherty committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. renamed website frontend

    rmdocherty committed Jun 21, 2024
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  2. loading logic 'working' - need to store values in state of app

    rmdocherty committed Jun 21, 2024
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  3. passing data up from file load

    rmdocherty committed Jun 21, 2024
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  4. started on canvas

    rmdocherty committed Jun 21, 2024
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Commits on Jun 22, 2024

  1. got preview image drawing working

    rmdocherty committed Jun 22, 2024
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Commits on Jun 23, 2024

  1. comments

    rmdocherty committed Jun 23, 2024
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  2. added aspect ratio correction

    rmdocherty committed Jun 23, 2024
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  3. started working on menu: will have series of states that are switched… 

    … between during analysis
    rmdocherty committed Jun 23, 2024
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  4. added phase check logic

    rmdocherty committed Jun 23, 2024
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  5. added phase select menu - need to update canvas now

    rmdocherty committed Jun 23, 2024
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  6. mroe phases selection work

    rmdocherty committed Jun 23, 2024
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Commits on Jun 25, 2024

  1. refactored to merge most states into a (ideally readonly) imageinfo o… 

    …bject
    rmdocherty committed Jun 25, 2024
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  2. phase selection preview now works :)

    rmdocherty committed Jun 25, 2024
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  3. started working on bounds prompt: should set image stats as table so … 

    …all aligned
    rmdocherty committed Jun 25, 2024
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  4. added comments to return to

    rmdocherty committed Jun 25, 2024
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  5. changed the prediction inetrval function, no minimization but with li… 

    …kelihood of phi.
    @amirDahari1
    amirDahari1 committed Jun 25, 2024
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  6. updated image info modal to be table, looks good

    rmdocherty committed Jun 25, 2024
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  7. merging the new way of predicting the confidence interval

    @amirDahari1
    amirDahari1 committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. confidence selection

    rmdocherty committed Jun 26, 2024
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  2. adding states for user inp

    rmdocherty committed Jun 26, 2024
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  3. scaling animation kind of working

    rmdocherty committed Jun 26, 2024
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  4. zoom after result now working

    rmdocherty committed Jun 26, 2024
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  5. canvas comments

    rmdocherty committed Jun 26, 2024
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  6. result modal slider

    rmdocherty committed Jun 26, 2024
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  7. Merge branch 'website' into development

    @rmdocherty
    rmdocherty authored Jun 26, 2024
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  8. Merge pull request #5 from tldr-group/development 

    getting new Development code for website
    @rmdocherty
    rmdocherty authored Jun 26, 2024
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  9. added basic server functionality: now gets phase frac of uploaded ima… 

    …ge when phase selected
    rmdocherty committed Jun 26, 2024
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  10. phase fractions now accurate

    rmdocherty committed Jun 26, 2024
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  11. messed around with core till it worked - not good and will need fixing

    rmdocherty committed Jun 26, 2024
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  12. added repr ping in app and updated modals

    rmdocherty committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. correct rezoom on recalculate

    rmdocherty committed Jun 27, 2024
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  2. minor text changes

    rmdocherty committed Jun 27, 2024
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  3. added reset

    rmdocherty committed Jun 27, 2024
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  4. made menu toast collapsible

    rmdocherty committed Jun 27, 2024
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  5. added error modal and wrappers around fetches

    rmdocherty committed Jun 27, 2024
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  6. added warning if returned cls > 70px

    rmdocherty committed Jun 27, 2024
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  7. oops

    rmdocherty committed Jun 27, 2024
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  8. total error works

    @amirDahari1
    amirDahari1 committed Jun 27, 2024
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  9. merging with website

    @amirDahari1
    amirDahari1 committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. fixing display bugs: removed navbar collapse in topbar and forced dis… 

    …play visible style on accordion contents
    rmdocherty committed Jun 28, 2024
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  2. restyled results modal: need to add visualisation, emphasis and addit… 

    …ional info
    rmdocherty committed Jun 28, 2024
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  3. removed text if on mobile

    rmdocherty committed Jun 28, 2024
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  4. updating modal

    rmdocherty committed Jun 28, 2024
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  5. backend changes: fixing make err pred

    rmdocherty committed Jun 28, 2024
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  6. volume fraction -> phase fraction

    rmdocherty committed Jun 28, 2024
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  7. split modals into the side menu and the popups in preparation to add … 

    …extra info modal
    rmdocherty committed Jun 28, 2024
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  8. added extra info modal

    rmdocherty committed Jun 28, 2024
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  9. change alpha if unselected

    rmdocherty committed Jun 28, 2024
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  10. minor text changes and import fix

    rmdocherty committed Jun 28, 2024
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Commits on Jul 2, 2024

  1. finish with total error

    @amirDahari1
    amirDahari1 committed Jul 2, 2024
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  2. small normalisation to the cumsum

    @amirDahari1
    amirDahari1 committed Jul 2, 2024
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  3. Merge pull request #18 from tldr-group/development 

    Development onto website
    @rmdocherty
    rmdocherty authored Jul 2, 2024
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Commits on Jul 3, 2024

  1. added 3d vis on canvas for stacks, now need to add 3d div on result

    rmdocherty committed Jul 3, 2024
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  2. added warning if image < 200 px in one dimension

    rmdocherty committed Jul 3, 2024
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  3. comments in core

    rmdocherty committed Jul 3, 2024
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  4. added switch in find_end_dist

    rmdocherty committed Jul 3, 2024
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  5. fixed warning check to ensure not all 2d data flagged

    rmdocherty committed Jul 3, 2024
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  6. started on comments

    rmdocherty committed Jul 3, 2024
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Commits on Jul 4, 2024

  1. bug fixes from refactoring

    rmdocherty committed Jul 4, 2024
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  2. more comments

    rmdocherty committed Jul 4, 2024
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  3. more comments

    rmdocherty committed Jul 4, 2024
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  4. more comments

    rmdocherty committed Jul 4, 2024
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  5. more comments

    rmdocherty committed Jul 4, 2024
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Commits on Jul 5, 2024

  1. final docstrings and types

    rmdocherty committed Jul 5, 2024
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  2. LAST COMMIT BEFORE LARGE FILESTRUCTURE CHANGES

    rmdocherty committed Jul 5, 2024
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  3. lots of moving

    rmdocherty committed Jul 5, 2024
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  4. reimports (still need to fix)

    rmdocherty committed Jul 5, 2024
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  5. rewrote into python package

    rmdocherty committed Jul 5, 2024
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  6. no longer need pytest, removed deprecated np.product

    rmdocherty committed Jul 5, 2024
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  7. tpc tests

    rmdocherty committed Jul 5, 2024
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  8. removed as unneeded

    rmdocherty committed Jul 5, 2024
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  9. more tests

    rmdocherty committed Jul 5, 2024
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Commits on Jul 8, 2024

  1. minor type changes

    rmdocherty committed Jul 8, 2024
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  2. added tests

    rmdocherty committed Jul 8, 2024
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  3. added warning if image larger than target

    rmdocherty committed Jul 8, 2024
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  4. added tests on commit

    rmdocherty committed Jul 8, 2024
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  5. tests update

    rmdocherty committed Jul 8, 2024
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  6. commented out linting until refactoring done

    rmdocherty committed Jul 8, 2024
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  7. more work on tests

    rmdocherty committed Jul 8, 2024
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Commits on Jul 25, 2024

  1. added rounding to 1 s.f of abs pf uncertainty and copy text button

    rmdocherty committed Jul 25, 2024
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  2. results modal updates

    rmdocherty committed Jul 25, 2024
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  3. added two more tests

    rmdocherty committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. minor changes

    rmdocherty committed Jul 26, 2024
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  2. readme updates

    rmdocherty committed Jul 26, 2024
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  3. boring path change

    rmdocherty committed Jul 26, 2024
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  4. todos on tests

    rmdocherty committed Jul 26, 2024
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  5. fixed 'model_err=True', by getting dims to align and supplying abs er… 

    …r to minimise rather than fracitonal err
    rmdocherty committed Jul 26, 2024
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  6. started work on post-results normal dist slider

    rmdocherty committed Jul 26, 2024
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  7. more work on sldier

    rmdocherty committed Jul 26, 2024
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  8. normal plot should be working once integrated

    rmdocherty committed Jul 26, 2024
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  9. can now return arrays needed to calc intervals client-side

    rmdocherty committed Jul 26, 2024
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  10. cleanup tests

    rmdocherty committed Jul 26, 2024
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  11. rewrite menu to be fullscreen and add temp slider

    rmdocherty committed Jul 26, 2024
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  12. got sldier working

    rmdocherty committed Jul 26, 2024
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  13. updating fig_model_error to incorporate the classical predictions

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    amirDahari1 committed Jul 26, 2024
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  14. fixed data distribution scaling and size

    rmdocherty committed Jul 26, 2024
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  15. started on warning page

    rmdocherty committed Jul 26, 2024
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  16. continuing fig err

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Commits on Jul 28, 2024

  1. finished fig total error

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Commits on Jul 29, 2024

  1. more slider changes: axes text

    rmdocherty committed Jul 29, 2024
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  2. made results modal and popup mutually exlclusive

    rmdocherty committed Jul 29, 2024
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  3. removed 'show full results' state and made it fn of menu_state state … 

    …machine
    rmdocherty committed Jul 29, 2024
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  4. more info flow now working

    rmdocherty committed Jul 29, 2024
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  5. updates to get server working

    rmdocherty committed Jul 29, 2024
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  6. n channel check

    rmdocherty committed Jul 29, 2024
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  7. minor fixes

    rmdocherty committed Jul 29, 2024
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  8. starting to re-do fig2

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Commits on Jul 30, 2024

  1. remaking fig2 with fft and radial tpc

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  2. removing old prints

    rmdocherty committed Jul 30, 2024
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  3. moved validation

    rmdocherty committed Jul 30, 2024
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  4. notes on old code

    rmdocherty committed Jul 30, 2024
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  5. removed duplicate functions from util

    rmdocherty committed Jul 30, 2024
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  6. copied files from dev branch to here

    rmdocherty committed Jul 30, 2024
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  7. test

    rmdocherty committed Jul 30, 2024
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  8. chnages to work with module structure

    rmdocherty committed Jul 30, 2024
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  9. changes to work with module structure

    rmdocherty committed Jul 30, 2024
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  10. moved slicegan files into repr folder

    rmdocherty committed Jul 30, 2024
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  11. updated to run with package

    rmdocherty committed Jul 30, 2024
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  12. removed old file

    rmdocherty committed Jul 30, 2024
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  13. VERY IMPORTANT CORE FIX

    rmdocherty committed Jul 30, 2024
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  14. no slicegan import fix

    rmdocherty committed Jul 30, 2024
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  15. val fixes

    rmdocherty committed Jul 30, 2024
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  16. revert back to min side length as not the issue

    rmdocherty committed Jul 30, 2024
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  17. fix fig 2

    rmdocherty committed Jul 30, 2024
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  18. updated tpc_test

    rmdocherty committed Jul 30, 2024
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  19. fixed tpc test

    rmdocherty committed Jul 30, 2024
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  20. added dev requirements

    rmdocherty committed Jul 30, 2024
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  21. merging branches

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    amirDahari1 committed Jul 30, 2024
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  22. Merge branch 'development' of https://github.com/tldr-group/Represent… 

    …ativity into cleanup
    rmdocherty committed Jul 30, 2024
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  23. Merge pull request #22 from tldr-group/cleanup 

    merge Cleanup onto Dev
    @rmdocherty
    rmdocherty authored Jul 30, 2024
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  24. working on fig2

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  25. continuing working on fig2

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  26. changed 5% difference to 3% difference in find_end_dist

    @amirDahari1
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  27. Merge pull request #23 from tldr-group/paper 

    Paper support larger feature sizes
    @amirDahari1
    amirDahari1 authored Jul 30, 2024
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Commits on Jul 31, 2024

  1. fixed nMore

    rmdocherty committed Jul 31, 2024
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  2. Merge pull request #24 from tldr-group/development 

    merge Development onto website for more stable find_end_dist
    @rmdocherty
    rmdocherty authored Jul 31, 2024
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  3. normalise only between 1/3 and times 3

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  4. Merge pull request #26 from tldr-group/paper 

    normalise only between 1/3 and times 3
    @rmdocherty
    rmdocherty authored Jul 31, 2024
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  5. Merge pull request #27 from tldr-group/paper 

    normalise only between 1/3 and times 3
    @amirDahari1
    amirDahari1 authored Jul 31, 2024
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  6. updated name, added default load

    rmdocherty committed Jul 31, 2024
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  7. added y-tick to slider

    rmdocherty committed Jul 31, 2024
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  8. fixed reset

    rmdocherty committed Jul 31, 2024
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  9. now returns good if unceratinty < target

    rmdocherty committed Jul 31, 2024
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  10. added rough time estimates

    rmdocherty committed Jul 31, 2024
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  11. working on readme

    rmdocherty committed Jul 31, 2024
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  12. readme gif link fixed

    rmdocherty committed Jul 31, 2024
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  13. higher res gif

    rmdocherty committed Jul 31, 2024
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  14. updating readme

    rmdocherty committed Jul 31, 2024
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  15. added tmp citation file

    rmdocherty committed Jul 31, 2024
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  16. updated citation

    rmdocherty committed Jul 31, 2024
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  17. rewrote result out to be a typed dict to get syntax highlighting and … 

    …type checking easily
    rmdocherty committed Jul 31, 2024
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  18. added functions to reuse results for fast l/bounds calcs

    rmdocherty committed Jul 31, 2024
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  19. added better example ipynb

    rmdocherty committed Jul 31, 2024
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  20. updated limitations on readme

    rmdocherty committed Jul 31, 2024
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  21. fixed tests

    rmdocherty committed Jul 31, 2024
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  22. removed old TODOs

    rmdocherty committed Jul 31, 2024
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  23. fixed zoom

    rmdocherty committed Jul 31, 2024
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  24. update readme

    rmdocherty committed Jul 31, 2024
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  25. finished fig2

    @amirDahari1
    amirDahari1 committed Jul 31, 2024
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Commits on Aug 1, 2024

  1. correct threshold for small im end of dist

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  2. finished fig2 for draft

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    amirDahari1 committed Aug 1, 2024
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  3. continuing work on circles im

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  4. validation for 3d as well

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  5. disabled canvas interpolation

    rmdocherty committed Aug 1, 2024
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  6. Merge pull request #29 from tldr-group/paper 

    correct 200^2 or 200^3 check in end_dist
    @amirDahari1
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  7. made font sans-serif by default

    rmdocherty committed Aug 1, 2024
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  8. added name of model to popup

    rmdocherty committed Aug 1, 2024
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  9. added bounds to normal slider and made it update sensibly and not cra… 

    …sh the rounding
    rmdocherty committed Aug 1, 2024
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  10. updated readme

    rmdocherty committed Aug 1, 2024
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  11. updated both fonts to be sans serif

    rmdocherty committed Aug 1, 2024
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  12. added a change phase button that lets you look at new wphase w/out ch… 

    …anging micrographs
    rmdocherty committed Aug 1, 2024
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  13. fixed small menu by decoupling conf from conf select

    rmdocherty committed Aug 1, 2024
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  14. added cls info to popup

    rmdocherty committed Aug 1, 2024
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  15. circle image ready

    @amirDahari1
    amirDahari1 committed Aug 1, 2024
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  16. model error fig ready

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  17. validation readu for 3D

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  18. updated 3D visualisation to be a cube

    rmdocherty committed Aug 1, 2024
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  19. fig model error finished for draft

    @amirDahari1
    amirDahari1 committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. removed old comments, fixed cube sides s.t not clipped

    rmdocherty committed Aug 2, 2024
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  2. old wowrkflow figure - need to split

    rmdocherty committed Aug 2, 2024
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  3. added bernoulli plot

    rmdocherty committed Aug 2, 2024
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Commits on Aug 3, 2024

  1. moved validation.py into its own folder

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Commits on Aug 4, 2024

  1. saving the validation results

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  2. starting to build a results figure

    @amirDahari1
    amirDahari1 committed Aug 4, 2024
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  3. continuing last figure

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    amirDahari1 committed Aug 4, 2024
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  4. finished model accuracy figure

    @amirDahari1
    amirDahari1 committed Aug 4, 2024
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Commits on Aug 5, 2024

  1. after long 3d run

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  2. 1000 runs for 3d validation

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Commits on Aug 6, 2024

  1. added better arr preprocessing for rgba tiffs

    rmdocherty committed Aug 6, 2024
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  2. Create LICENSE

    @amirDahari1
    amirDahari1 authored Aug 6, 2024
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  3. Update LICENSE

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  4. Merge pull request #38 from tldr-group/paper 

    Paper
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  5. Merge branch 'development' into website_

    @rmdocherty
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  6. Merge pull request #39 from tldr-group/website_ 

    merge Website onto dev
    @rmdocherty
    rmdocherty authored Aug 6, 2024
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