CRAN release candidate (#5)

* Revise DESCRIPTION file ordering.

* Add URLs to project (update w/ doc domain)

* Rename bijectionvector() and inv_bijectionvector() to attribute_bijection() and attribute_inv_bijection()

* Rename `sim_alpha_matrix()` -> `sim_attribute_classes()`

* Add simulation routine for subject attributes

* Update Package Flags to use both C++11 and OpenMP when available.

* Update README with function renames.

* Improve documentation by:

- Including authors
- See also
- Fixing in-line doc order

* Add vignettes

* Remove some README content covered in vignettes.

* Load the package

* Improve intro-paragraph to account for instructions being added that relate to the _R_ function portion.

* Update NEWS file with latest release information

* Improve CRAN submission comments w/ r-devel updates.

* - Use 2 cores when testing
- Do not install suggested packages by default
- Run jobs on both release and devel versions of _R_ to save from dealing with the win-builder.

* References vignettes from README (maybe?)

* Add citation information

.gitignore

@@ -1,3 +1,4 @@
+inst/doc
 .Rproj.user
 .Rhistory
 .RData

.travis.yml

@@ -3,5 +3,16 @@
 language: R
 sudo: false
 cache: packages
+
+env:
+  global:
+  - MAKEFLAGS="-j 2"
+  - _R_CHECK_FORCE_SUGGESTS_=false
+
+jobs:
+  include:
+  - r: devel
+  - r: release
+
 after_success:
     - Rscript -e 'covr::codecov()'

DESCRIPTION

@@ -2,9 +2,20 @@ Package: simcdm
 Type: Package
 Title: Simulate Cognitive Diagnostic Model (CDM) Data
 Version: 0.0.5
-Authors@R: c(person("James Joseph", "Balamuta", email = "balamut2@illinois.edu", role = c("aut", "cre", "cph")),
-             person("Steven Andrew", "Culpepper", email = "sculpepp@illinois.edu", role = c("aut", "cph")),
-             person("Aaron", "Hudson", email = "awhudson@uw.edu", role = c("ctb", "cph")))
+Authors@R: c(person("James Joseph", "Balamuta", 
+                    email = "balamut2@illinois.edu",
+                    role = c("aut", "cre", "cph"),
+                    comment = c(ORCID = "0000-0003-2826-8458")),
+             person("Steven Andrew", "Culpepper", 
+                    email = "sculpepp@illinois.edu",
+                    role = c("aut", "cph"),
+                    comment = c(ORCID = "0000-0003-4226-6176")
+                    ),
+             person("Aaron", "Hudson", 
+                    email = "awhudson@uw.edu",
+                    role = c("ctb", "cph")
+                    )
+            )
 Description: Provides efficient R and 'C++' routines to simulate cognitive diagnostic
     model data for Deterministic Input, Noisy "And" Gate (DINA) and
     reduced Reparameterized Unified Model (rRUM) from 
@@ -13,12 +24,18 @@ Description: Provides efficient R and 'C++' routines to simulate cognitive diagn
     de la Torre (2009) <doi:10.3102/1076998607309474>.
 Depends:
     R (>= 3.5.0)
-LinkingTo: Rcpp, RcppArmadillo (>= 0.9.200)
-License: GPL (>= 2)
 Imports: Rcpp  (>= 1.0.0)
+LinkingTo: Rcpp,
+    RcppArmadillo (>= 0.9.200)
+URL: https://github.com/tmsalab/simcdm
+BugReports: https://github.com/tmsalab/simcdm/issues
+License: GPL (>= 2)
 RoxygenNote: 6.1.1
 Roxygen: list(markdown = TRUE)
 Encoding: UTF-8
 Suggests: 
     testthat,
-    covr
+    covr,
+    knitr,
+    rmarkdown
+VignetteBuilder: knitr

NAMESPACE

@@ -1,13 +1,14 @@
 # Generated by roxygen2: do not edit by hand
 
-export(bijectionvector)
-export(inv_bijectionvector)
-export(sim_alpha_matrix)
+export(attribute_bijection)
+export(attribute_inv_bijection)
+export(sim_attribute_classes)
 export(sim_dina_attributes)
 export(sim_dina_class)
 export(sim_dina_items)
 export(sim_eta_matrix)
 export(sim_q_matrix)
 export(sim_rrum_items)
+export(sim_subject_attributes)
 importFrom(Rcpp,evalCpp)
 useDynLib(simcdm, .registration=TRUE)

NEWS.md

@@ -1,4 +1,4 @@
-# simcdm 0.0.4
+# simcdm 0.0.5
 
 - Added _C++_ and _R_ functions for simulation of:
     - Deterministic Input, Noisy "And" Gate (DINA)
@@ -9,4 +9,5 @@
     - Matrices:
         - Random Q Matrix: `sim_q_matrix()`
         - ETA Matrix: `sim_eta_matrix()`
-        - Latent Attribute Profile Matrix: `sim_alpha_matrix()`
+        - Latent Attribute Profile Matrix: `sim_attribute_classes()`
+        - Latent Attribute Profiles for Subjects: `sim_subject_attributes()`