CliCon#1

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bgopinath3 wants to merge 433 commits intotnaumann:masterfrom

mit-medg:master

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Commits on Aug 1, 2014

minor edits to README
Willie Boag
committed
Minor edits in install.sh
Willie Boag
committed
Minor edits in install.sh
Willie Boag
committed
Added pip install for nose
Willie Boag
committed
Added pip install for nose
Willie Boag
committed
Forgot to mention install.sh must be run with 'source', not 'bash'
Willie Boag
committed
Forgot to mention install.sh must be run with 'source', not 'bash'
Willie Boag
committed
typo in README
Willie Boag
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typo in README
Willie Boag
committed

Commits on Aug 5, 2014

adjust model.py to use crfsuite's SWIG wrapper
Willie Boag
committed
adjust model.py to use crfsuite's SWIG wrapper
Willie Boag
committed
Merge branch 'master' into machine-learning
Willie Boag
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Merge branch 'master' into machine-learning
Willie Boag
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get rid of self.type
Willie Boag
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get rid of self.type
Willie Boag
committed

Commits on Aug 10, 2014

Fold CRF back using python-crfsuite (with model file workaround)
Willie Boag
committed
Fold CRF back using python-crfsuite (with model file workaround)
Willie Boag
committed
Add CRF installation to install.sh
Willie Boag
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Add CRF installation to install.sh
Willie Boag
committed
modify install.sh to use machine-learning branch (until merged back to master)
Willie Boag
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modify install.sh to use machine-learning branch (until merged back to master)
Willie Boag
committed

Commits on Aug 12, 2014

Update README.rst
arumshisky
committed
Update README.rst
arumshisky
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Set crf to use default parameters
Willie Boag
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Set crf to use default parameters
Willie Boag
committed

Commits on Aug 13, 2014

Added sanity checks for first pass predictions
Willie Boag
committed
Added sanity checks for first pass predictions
Willie Boag
committed
Modified install script so it doesn't git clone the project
Willie Boag
committed
Modified install script so it doesn't git clone the project
Willie Boag
committed

Commits on Aug 16, 2014

Merge branch 'command-line-interface' of https://github.com/mitmedg/CliCon
kwaco
committed
Merge branch 'command-line-interface' of https://github.com/mitmedg/CliCon
kwaco
committed
merging scripting and cli
kwaco
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merging scripting and cli
kwaco
committed
Reorganized features_dir module
Willie Boag
committed
Reorganized features_dir module
Willie Boag
committed
Changed features/ to features_dir/
Willie Boag
committed
Changed features/ to features_dir/
Willie Boag
committed
Extend returned values (for easier testing of first pass results)
Willie Boag
committed
Extend returned values (for easier testing of first pass results)
Willie Boag
committed
Extend for first pass development
Willie Boag
committed
Extend for first pass development
Willie Boag
committed
Added crf back into first pass
Willie Boag
committed
Added crf back into first pass
Willie Boag
committed
Merging machine-learning branch
Willie Boag
committed
Merging machine-learning branch
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed

Commits on Aug 21, 2014

Added a few examples to readme
Willie Boag
committed
Added a few examples to readme
Willie Boag
committed
updating readme with examples
Willie Boag
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updating readme with examples
Willie Boag
committed
Add usage examples to readme & extend support for xml format
Willie Boag
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Add usage examples to readme & extend support for xml format
Willie Boag
committed
Update README.rst
wboag
committed
Update README.rst
wboag
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Update README.rst
arumshisky
committed
Update README.rst
arumshisky
committed
Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
committed
Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
committed
Update README.rst
arumshisky
committed
Update README.rst
arumshisky
committed
Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
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Update README.rst
arumshisky
committed

Commits on Aug 22, 2014

Commits on Aug 26, 2014

Commits on Aug 27, 2014

Modified install.sh to skip compilation of existing libraries
Willie Boag
committed
Modified install.sh to skip compilation of existing libraries
Willie Boag
committed
Update README.rst
Willie Boag
committed
Update README.rst
Willie Boag
committed
merge readme
Willie Boag
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merge readme
Willie Boag
committed
Add demo script of usage example for running system
Willie Boag
committed
Add demo script of usage example for running system
Willie Boag
committed
replace depricated ImmutableSet with frozenset
Willie Boag
committed
replace depricated ImmutableSet with frozenset
Willie Boag
committed
Replace depricated ImmutableSet with frozenset
Willie Boag
committed
Replace depricated ImmutableSet with frozenset
Willie Boag
committed
Update README.rst
wboag
committed
Update README.rst
wboag
committed
Update README.rst
wboag
committed
Update README.rst
wboag
committed

Commits on Aug 29, 2014

Commits on Aug 30, 2014

Commits on Aug 31, 2014

Commits on Sep 1, 2014

i2b2 eval update
kwaco
committed
i2b2 eval update
kwaco
committed
user friendly installation messages and log
Willie Boag
committed
user friendly installation messages and log
Willie Boag
committed
Safe guard against duplicate entries in concept file
Willie Boag
committed
Safe guard against duplicate entries in concept file
Willie Boag
committed
cache genia features
Willie Boag
committed
cache genia features
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed

Commits on Sep 2, 2014

update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
Update install.sh
wboag
committed
Update install.sh
wboag
committed
update install.sh
Willie Boag
committed
update install.sh
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Update install.sh
wboag
committed
Update install.sh
wboag
committed
Update install.sh
wboag
committed
Update install.sh
wboag
committed
add genia cache
Willie Boag
committed
add genia cache
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
go back to new eval script
Willie Boag
committed
go back to new eval script
Willie Boag
committed
Escape command inside string
wboag
committed
Escape command inside string
wboag
committed

Commits on Sep 3, 2014

Strip non-printable characters from text
Willie Boag
committed
Strip non-printable characters from text
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed

Commits on Sep 24, 2014

Update SQLookup.py
Kevin Wacome
committed
Update SQLookup.py
Kevin Wacome
committed

Commits on Oct 6, 2014

Update demos & calls using clicon script
Willie Boag
committed
Update demos & calls using clicon script
Willie Boag
committed
move all data format logic into Note and add author descriptions
Willie Boag
committed
move all data format logic into Note and add author descriptions
Willie Boag
committed
Add trie for UMLS lookups (not fully done yet)
Willie Boag
committed
Add trie for UMLS lookups (not fully done yet)
Willie Boag
committed
Bugfixes in features directory
Willie Boag
committed
Bugfixes in features directory
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Merge branch 'master' of https://github.com/mitmedg/CliCon
Willie Boag
committed
Add support for semeval reader
Willie Boag
committed
Add support for semeval reader
Willie Boag
committed

Commits on Oct 8, 2014

Update note.py
Kevin Wacome
committed
Update note.py
Kevin Wacome
committed

Commits on Oct 22, 2014

Commits on Oct 28, 2014

Commits on Nov 4, 2014

Commits on Nov 5, 2014

Commits on Nov 10, 2014

Commits on Nov 11, 2014

Commits on Nov 13, 2014

Commits on Nov 18, 2014

Merge branch 'master' of https://github.com/mitmedg/CliCon
wboag
committed

Commits on Jan 28, 2015

fixed issue with note in master
kwaco
committed

Commits on Feb 28, 2015