Corrected error and warnings for bulk statistics when feature labels do not match labels in segmentation mask #158
Workflow file for this run
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| name: Linting | |
| on: | |
| pull_request_target: | |
| branches: | |
| - '*' | |
| permissions: | |
| pull-requests: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v3 | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-version: latest | |
| miniforge-variant: mambaforge | |
| channel-priority: strict | |
| channels: conda-forge | |
| show-channel-urls: true | |
| use-only-tar-bz2: true | |
| - name: Install tobac and pylint | |
| run: | | |
| mamba install --yes pylint | |
| pip install . | |
| - name: Store the PR branch | |
| run: | | |
| echo "SHA=$(git rev-parse "$GITHUB_SHA")" >> $GITHUB_OUTPUT | |
| id: git | |
| - name: Checkout RC branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.base_ref }} | |
| - name: Get pylint score of RC branch | |
| run: | | |
| pylint tobac --disable=C --exit-zero | |
| id: main_score | |
| - name: Checkout PR branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: "${{ steps.git.outputs.SHA }}" | |
| - name: Get pylint score of PR branch | |
| run: | | |
| # use shell script to save only tail of output | |
| OUTPUT_PART=$(pylint tobac --disable=C --exit-zero | tail -n 2) | |
| # but post entire output in the action details | |
| pylint tobac --disable=C --exit-zero | |
| # define random delimiter for multiline string | |
| EOF=$(dd if=/dev/urandom bs=15 count=1 status=none | base64) | |
| echo "MESSAGE<<$EOF" >> "$GITHUB_OUTPUT" | |
| echo "$OUTPUT_PART" >> "$GITHUB_OUTPUT" | |
| echo "$EOF" >> "$GITHUB_OUTPUT" | |
| id: pr_score | |
| - name: Find Comment | |
| uses: peter-evans/find-comment@v2 | |
| id: comment | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| comment-author: 'github-actions[bot]' | |
| body-includes: Linting results by Pylint | |
| - name: Post result to PR | |
| uses: peter-evans/create-or-update-comment@v3 | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| comment-id: ${{ steps.comment.outputs.comment-id }} | |
| edit-mode: replace | |
| body: | | |
| Linting results by Pylint: | |
| -------------------------- | |
| ${{ steps.pr_score.outputs.MESSAGE }} | |
| <sub>The linting score is an indicator that reflects how well your code version follows Pylint’s coding standards and quality metrics with respect to the ${{ github.base_ref }} branch. | |
| A decrease usually indicates your new code does not fully meet style guidelines or has potential errors.<sup> |