Release Candidate 0.12.0

.gitignore

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+# Build & compilation output
+/build
+/bin
+/dist
+
+# Test data
+/data
+/test
+
+# IDEs and editors
+/.idea
+.project
+.c9/
+*.launch
+.settings/
+*.sublime-workspace
+/.vscode
+.vscode/*
+!.vscode/settings.json
+!.vscode/tasks.json
+!.vscode/launch.json
+!.vscode/extensions.json
+
+# System Files
+.DS_Store
+Thumbs.db

CMakeLists.txt

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+cmake_minimum_required(VERSION 3.1)
+project(tersect)
+
+add_definitions(-D_POSIX_C_SOURCE=200809L)
+
+set(DEFAULT_BUILD_TYPE "Release")
+if(NOT CMAKE_BUILD_TYPE)
+    set(CMAKE_BUILD_TYPE ${DEFAULT_BUILD_TYPE})
+endif()
+
+set(RELEASE_OPTIONS -pedantic -Wall -Wextra -O3 -march=native -std=c99)
+set(DEBUG_OPTIONS -pedantic -Wall -Wextra -O3 -march=native -std=c99 -g)
+
+add_executable(tersect "")
+target_compile_options(tersect
+PRIVATE
+    "$<$<CONFIG:Release>:${RELEASE_OPTIONS}>"
+    "$<$<CONFIG:Debug>:${DEBUG_OPTIONS}>"
+)
+
+set_target_properties(tersect
+PROPERTIES
+    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/../bin
+)
+
+execute_process(
+    COMMAND git describe --tags
+    WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+    OUTPUT_VARIABLE GIT_VERSION_TAG
+    OUTPUT_STRIP_TRAILING_WHITESPACE
+)
+string(REGEX REPLACE "^v" "" TERSECT_VERSION_TAG "${GIT_VERSION_TAG}")
+set(VERSION_FILE ${CMAKE_BINARY_DIR}/src/version.h)
+configure_file(src/version.h.in ${VERSION_FILE})
+
+include_directories(include ${CMAKE_BINARY_DIR}/src)
+
+find_package(BISON 2.6 REQUIRED)
+find_package(FLEX 2.5 REQUIRED)
+bison_target(QueryParser src/query.y ${CMAKE_BINARY_DIR}/src/query.tab.c)
+flex_target(QueryScanner src/query.l ${CMAKE_BINARY_DIR}/src/lex.yy.c)
+add_flex_bison_dependency(QueryScanner QueryParser)
+
+add_subdirectory(src)
+
+install(TARGETS tersect DESTINATION bin)
+
+set(CPACK_GENERATOR DEB RPM TGZ)
+set(CPACK_PACKAGE_NAME tersect)
+set(CPACK_PACKAGE_VERSION "${TERSECT_VERSION_TAG}")
+set(CPACK_PACKAGE_CONTACT "Tomasz Kurowski <t.j.kurowski@cranfield.ac.uk>")
+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY
+    "set theoretical operations on genomic variant data")
+set(CPACK_DEBIAN_PACKAGE_SECTION "science")
+include(CPack)

LICENSE

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+Copyright (C) 2019 Cranfield University
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.