ekatrukha / BigTrace Star 28 Code Issues Pull requests FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets java imglib2 volume-rendering fiji-plugin 3d-volume utrecht-university bigdataviewer curve-tracing 3d-microscopy Updated Dec 24, 2024 Java
b-heifets / UNRAVEL Star 6 Code Issues Pull requests UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images registration segmentation lsfm 3d-microscopy 3d-image-analysis voxel-wise-stats region-wise-stats cluster-wise-stats cleared-mouse-brains Updated Dec 18, 2024 Python
PTRRupprecht / Cell_Detection Star 0 Code Issues Pull requests Python code for merging and refinement of detected neurons in large 3D stacks deep-learning convolutional-neural-networks cell-detection peak-detection light-sheet-microcopy mesospim 3d-microscopy Updated Dec 9, 2023 Python
ekatrukha / AveragingND Star 0 Code Issues Pull requests FIJI plugin for the averaging of ND (2/3/4D) images java imglib2 microscopy fiji-plugin utrecht-university averaging 3d-microscopy Updated Sep 12, 2024 Java
imrahilias / biophysics Star 0 Code Issues Pull requests All this is part of my Projektarbeit (student project) @ TU Wien 2021 super-resolution fluorescence-microscopy-imaging smlm single-molecule-imaging 3d-microscopy dual-channel-smlm Updated Feb 7, 2023 Jupyter Notebook