PNH segmentation pipelines based on nipype

Tools for dealing with neuroimaging data in the BIDS structure

Prisma preprocessing (AFNI)

A Matlab-based software package for preprocessing the resting-state fMRI data

afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.

Wrapper Functions for 'AFNI' software in R

runs AFNI's 3dQwarp function over a NIfTI file

Scripts to process preclinical obsessive compulsive disorder data

batch scripts to install afni, tailored to the process for installing in ubuntu on windows subsystem for linux.

Convenience functions for the LNCD. Includes db query, data processing, modeling, and visualizing

BrainLife.io Regional Homogeneity app

job advert **not currently on offer**

Various scripts (Bash, Matlab, Python) for processing ASL MRI data using AFNI, SPM, and FSL.

Docker image that provides a Ubuntu 16.04 (Xenial) with all CMP pre-requisite software installed

Preprocessing fMRI scans, localizing the brain area that processes faces.

Pipeline to analyze fMRI data with AFNI

An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.