PNH segmentation pipelines based on nipype

Neuroscience Lab Assignments related to various aspects of neuroscience research, including visual search tasks with Psychtoolbox, regression and ANOVA analysis, EEG preprocessing with EEGLab, and fMRI analysis with AFNI.

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.

Convenience functions for the LNCD. Includes db query, data processing, modeling, and visualizing

Various scripts (Bash, Matlab, Python) for processing ASL MRI data using AFNI, SPM, and FSL.

runs AFNI's 3dQwarp function over a NIfTI file

A Matlab-based software package for preprocessing the resting-state fMRI data

BrainLife.io Regional Homogeneity app

Preprocessing fMRI scans, localizing the brain area that processes faces.

afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.

Wrapper Functions for 'AFNI' software in R

job advert **not currently on offer**

Scripts to process preclinical obsessive compulsive disorder data

Prisma preprocessing (AFNI)

Tools for dealing with neuroimaging data in the BIDS structure

batch scripts to install afni, tailored to the process for installing in ubuntu on windows subsystem for linux.

An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline

Docker image that provides a Ubuntu 16.04 (Xenial) with all CMP pre-requisite software installed