The fastest shell plugin manager.

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

📚 Tools and databases for analyzing HLA and VDJ genes.

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

Post-analysis of immune repertoire sequencing data

Improved antibody structure-based design using inverse folding

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Sapiens is a human antibody language model based on BERT.

Official repository for discrete Walk-Jump Sampling (dWJS)

Official repository for discrete Walk-Jump Sampling (dWJS)

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

A RepSeq processing swiss-knife

Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

Ssh-agent management for zsh

Python package for analysis of antibody heavy and light chains

$HOME of my ~/.dotfiles (macOS & Linux)

Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.

Material to run the HADDOCK antibody-antigen modelling protocol

Inference code for Bio-Inspired Antibody Language Model