Apptainer: Application containers for Linux
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Mar 13, 2026 - Go
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apptainer
Here are 116 public repositories matching this topic...
Open source guides/codes for mastering deep learning to deploying deep learning in production in PyTorch, Python, Apptainer, and more.
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Sep 4, 2025 - Python
A Slurm cluster using docker-compose
docker elasticsearch kibana docker-compose hpc gpu cuda slurm nvidia slurm-cluster rocky-linux apptainer
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Mar 12, 2026 - Shell
Generate custom Docker and Singularity images, and minimize existing containers
linux docker science dockerfile reproducible-research containers neuroscience singularity-container nipype apptainer
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Mar 15, 2026 - Python
🦠🧬🧑💻📇 Microbial genomes-to-report pipeline
bioinformatics snakemake hpc slurm conda metagenomics bioconda microbial-genomics bacteria clinical-research pbs prokaryotes archaea genomes-to-report apptainer
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Mar 14, 2026 - Python
You should offer both Podman and Apptainer with name spaces on your HPC systems
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Apr 12, 2024 - Shell
Apptainer in Docker!
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Nov 11, 2025 - Dockerfile
Singularity recipe for AlphaFold
hpc containers slurm singularity high-performance-computing containerization protein-folding alphafold apptainer
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Nov 12, 2024 - Python
Pixi is cool, apptainer is cool, let's make them both work together !
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Mar 12, 2026 - Shell
TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis
bioinformatics quality-control rna-seq snakemake conda singularity deseq2 ideal reproducibility high-throughput transcriptomics salmon differential-expression snakemake-workflow pathway-enrichment-analysis renv clusterprofiler apptainer genetonic pcaexplorer
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Mar 9, 2026 - R
Container manager for E4S
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Mar 13, 2026 - Python
Provides syntax highlighting for Apptainer/Singularity definition files.
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Dec 24, 2025 - Singularity
Local Conda environments via Apptainer.
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Feb 8, 2026
Automated builds of Apptainer containers of HPC packages; focusing on OpenFOAM and friends
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Mar 9, 2026 - Python
A collections of portable, real-world AI workflows for testing and benchmarking
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Jul 21, 2022 - Shell
MolSSI Container Hub for Computational Molecular Science
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Sep 20, 2024 - Python
Online material for the UPPMAX Singularity workshop
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Feb 3, 2025 - Shell
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