Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
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Dec 17, 2024 - Bikeshed
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bioimaging
Here are 34 public repositories matching this topic...
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
python c-plus-plus cross-platform image-processing stitching high-performance-computing tomography image-analysis brain-imaging bioimage-informatics cluster-computing computing-cluster bioimaging bioimage-analysis 3d-images non-rigid-registration non-rigid-stitching
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Aug 30, 2024 - C++
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation imaging denoising bioimaging napari-plugin napari
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Dec 12, 2024 - TypeScript
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Jul 11, 2023 - R
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
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Dec 20, 2024 - Python
R package for visualization of highly multiplexed imaging data
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Jun 25, 2024 - R
Python libraries for loading, running and packaging bioimage.io models
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Dec 20, 2024 - Jupyter Notebook
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
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Nov 26, 2024 - Python
Python 3 x-ray simulator
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Jan 26, 2019 - Jupyter Notebook
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
python slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Dec 18, 2024 - Python
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images
bioinformatics deep-neural-networks deep-learning artificial-intelligence healthcare bioimaging covid-19
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Nov 16, 2020 - Jupyter Notebook
TileDB BioImaging plugin for Napari
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Jun 5, 2023 - Python
Visualisation software for imaging mass cytometry data
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Feb 22, 2023 - Rust
3D volume rendering software for fluorescence microscopy
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May 18, 2024 - Swift
Scripts for use with BIOMERO
slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Dec 3, 2024 - Python
Predicting successful CME events using only clathrin markers. 🦠📈
tracking data-science machine-learning bioinformatics statistics computational-biology prediction python3 classification segmentation computational feature-engineering cell-biology bioimaging endocytosis cell-transport
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Feb 6, 2023 - Jupyter Notebook
A Python3 Radial Image Analysis Toolkit
image-processing image-segmentation image-analysis microscopy hacktoberfest bioimaging format-conversion-tool
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Feb 4, 2022 - Python
Zarr Homepage
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Nov 29, 2024 - JavaScript
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
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Jul 7, 2020 - JavaScript
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