Natural Language Search and Analysis of High Dimensional Genomic Data
Using data from hu.MAP 3.0 with the convenience of Python and Jupyter.
Script for custom SNPs selection in QTL study using vcf files as input.
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
Adjustments to bschiffthaler/ngs docker
This repository contains an example implementation of DESeq2 in Python.
🦠 Biology (bioinformatic, biology, bio-hacking, etc) | Quickstarts 🦠
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
Explore biomolecular pathways in Reactome from the command-line or a Python script
a API to BIGG metabolic databases
This python script parses a mpileup file to extract the coverage of each base at each position.
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
plotting and summary information tools for the mRNA proteome to genome alignments.
A set of processes/pipelines for bioinformatics
Compute Global Maximum Similarity Matrix for 2 Sequences
TopONE is a project that studies recombination events using topological data analysis. This was made in the PGC-BTIP 2024 internship by Alfonso Miguel Cruz and Claire Angelie Gabisay, and mentored by C.J. Palpal-latoc.
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
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