A comprehensive QTL analysis tool by multivariate linear mixed model.
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Updated
Oct 7, 2024 - Julia
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qtl-analysis
Here are 9 public repositories matching this topic...
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance
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Jan 3, 2025 - Python
Script for custom SNPs selection in QTL study using vcf files as input.
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Dec 18, 2024 - Python
Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
docker nginx flask bioinformatics transcription-factors genomics rice agriculture community-detection uwsgi dash cytoscape enrichment-analysis agriculture-research coexpression-network transcription-factor-binding-site post-gwas qtl-analysis interactive-dashboard
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Dec 29, 2024 - Python
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance
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Updated
Jan 3, 2025 - Python
Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.
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Aug 16, 2021 - R
A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).
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Apr 20, 2024 - Shell
Genetic mapping and QTL analysis of basil
machine-learning genetics dplyr r-programming basil linkage-mapping rqtl corrplot qtl-analysis r-asmap
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Jul 3, 2024
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