A comprehensive QTL analysis tool by multivariate linear mixed model.

PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies and epistasis investigation. PAGER dynamically encodes genetic variants or multi-locus genotypes (MLG) by normalizing mean phenotypic differences between genotype/MLG classes.

PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies and epistasis investigation. PAGER dynamically encodes genetic variants or multi-locus genotypes (MLG) by normalizing mean phenotypic differences between genotype/MLG classes.

Script for custom SNPs selection in QTL study using vcf files as input.

Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.

A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).

SNPs selection for QTL study.

Genetic mapping and QTL analysis of basil