A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
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Feb 26, 2024 - Perl
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linkage-mapping
Here are 10 public repositories matching this topic...
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
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Jan 8, 2024 - WDL
Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.
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May 8, 2024 - R
An R package to visualize genetic maps.
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Oct 29, 2022 - R
VCF to JoinMap loc (variant-to-marker) conversion tool
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Feb 16, 2024 - Python
Genetic mapping and QTL analysis of basil
machine-learning genetics dplyr r-programming basil linkage-mapping rqtl corrplot qtl-analysis r-asmap
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Jul 3, 2024
Analyses of my MSc Thesis: "Genetic architecture of parasitoid counteradaptation to symbiont-conferred resistance"
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Apr 12, 2021 - R
Converts between linkage output formats {Genehunter, Merlin, Simwalk, Swiftlink} → Allegro
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Oct 25, 2020 - Python
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
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Dec 13, 2017 - Python
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