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genotype-to-phenotype

Here are 4 public repositories matching this topic...

EpistasisLab / PAGER

PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.

encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance

Updated Jan 3, 2025
Python

pfreda / PAGER

PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.

encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance

Updated Jan 3, 2025
Python

allydunham / yeast_strains

Genotype to phenotype prediction using transcriptomics and proteomics data.

bioinformatics prediction proteomics transcriptomics genotype-to-phenotype

Updated Jan 7, 2022
R

allydunham / hog_pathway

S. cerevisiae genotype to phenotype prediction

bioinformatics prediction genotype-to-phenotype

Updated Dec 18, 2021
R

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