Python library for attractor identification and control in Boolean networks
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May 23, 2024 - Jupyter Notebook
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boolean-networks
Here are 12 public repositories matching this topic...
Synthesis and Reprogramming of Most Permissive Boolean Networks
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Aug 27, 2025 - Python
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
machine-learning bioinformatics scikit-learn computational-biology pandas python3 scrna-seq single-cell-rna-seq boolean-networks
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Aug 13, 2025 - Python
Distributed simulations and analysis of synchronous Boolean networks
python bioinformatics systems-biology mpi boolean-networks regulatory-networks boolsi distributed-simulations
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Aug 20, 2025 - Python
BANG is a Python package dedicated to analysis, simulation, and control of Boolean networks with the help of CUDA.
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Jun 12, 2025 - Python
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
computational-biology drug-discovery biological-networks in-silico therapeutic-targets boolean-networks biological-simulation biological-modeling regulatory-networks
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May 14, 2022 - Go
The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
biology systems-biology network-science petri-nets control-theory feedback-vertex-set answer-set-programming attractors boolean-networks discrete-dynamics waddington-landscape
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Aug 18, 2025 - Python
scRNA2BoNI - A general framework to infer Boolean networks from scRNAseq data.
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Jan 29, 2024 - Python
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
simulation modeling computational-biology networks dynamical-systems fuzzy-logic biological-networks logical-operators edge-computing networks-biology boolean-networks biological-simulation biological-modeling regulatory-networks continuous-logic edge-computation edge-tuning
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Apr 5, 2019 - R
Notebooks demonstrating colomoto.minibn for computing dynamics of Boolean networks with various update modes
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Aug 5, 2022 - Jupyter Notebook
BoNesisTools is a python package proposing bioinformatics tools for upstream and downstream analysis of BoNesis framework
python bioinformatics systems-biology rnaseq single-cell atacseq boolean-networks anndata gene-regulatory-networks mudata
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Jul 1, 2025 - Python
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
control answer-set-programming attractors reprogramming boolean-networks minimal-trap-spaces most-permissive
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Mar 24, 2023 - TeX
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