Predicting Cell Health with Morphological Profiles
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Jan 26, 2022 - HTML
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cell-painting
Here are 16 public repositories matching this topic...
PDD: Awesome Phenotypic Drug Discovery
drug-design cell-painting phenotypic-drug-discovery aidd high-content-imaging image-based-drug-discovery image-beasd-cell-profiling phenotype-based-drug-discovery gene-based-drug-design
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Jul 24, 2025
Processed Cell Painting Data for the LINCS Drug Repurposing Project
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Aug 4, 2022 - Jupyter Notebook
Predicting pharmacodynamic responses to cancer drugs using cell morphology
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Oct 19, 2024 - Jupyter Notebook
👩🍳 Recipe repository for image-based profiling of Pooled Cell Painting experiments
data-science recipe pooled-screen cell-painting carpenter-lab pooled-cell-painting in-situ-sequencing
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Mar 25, 2025 - Python
Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
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Jan 24, 2022 - Jupyter Notebook
Accompanying code for Image2Omics
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Aug 29, 2023 - Python
Benchmarking data processing strategies for Cell Painting data of NF1 Schwann cells. See analysis repository (https://github.com/WayScience/NF1_SchwannCell_data_analysis) for information on how the data was interpreted.
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Mar 9, 2023 - Jupyter Notebook
[CVPRW 2024] Learning interpretable single-cell morphological profiles from 3D Cell Painting z-stacks
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Jul 26, 2024
Image-based profiling and machine learning to predict failing vs. non-failing cardiac fibroblasts
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Jul 15, 2025 - Jupyter Notebook
Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)
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Jul 23, 2025 - Jupyter Notebook
🛠️ Use me to version control Pooled Cell Painting data and processing pipelines
pooled-screen cell-painting carpenter-lab pooled-cell-painting template-repository in-situ-sequencing
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May 21, 2024 - Python
Anomaly detection for high-content image-based phenotypic cell profiling
visualization machine-learning deep-learning drug-discovery profiling representation-learning anomaly-detection cell-painting cell-imaging
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Feb 7, 2025 - Jupyter Notebook
RF models for the prediction of cell viability in muscle cells from Cell Painting profiles.
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Mar 20, 2025 - Jupyter Notebook
cpg0011-lipocyteprofiler - Batch1 and Batch3
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Nov 19, 2024 - Jupyter Notebook
quickly generate overviews of Cell Painting image plates
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Jan 6, 2025 - Rust
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