AQUAS TF and histone ChIP-seq pipeline

Pipeline for the analysis of PE ChIP-seq data

CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.

Paired-end ChIPseq data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, MACS2, MultiQC

MINUTE-ChIP data analysis workflow

Sequencing data preprocessing