A python project for analysis of codon usage for gene or genome analysis

Here you can find basically most of the exercises I'm solving during my University journey. This repo will contain lots of folders inside of it, each of one related to one subject. It won't be limited to one language.

The codon project was created to increase code sharing, code consistency, coding standards, and encourage collaboration. Package documentation is available on the GitHub pages. codonPython aims to reduce the barrier for entry for analysis and provide software development experience for those at a higher level of technical ability.

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

Cho codon optimization WIP

A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

Parallel demonstrations for counting and printing prime numbers

システム上で使用する暗号化システムに、mRNAコドンの仕組みを応用する研究です

Implementation of the "Ray Tracing in One Weekend" books using Codon

Memorize triplet codes with a simple game.

OpenSHMEM bindings for the Codon Python compiler

Interspecies protein translator + translation optimizer

Awesome codon

Translate peptide sequences into genes using the nucleus genetic code and E. coli codon frequencies.

Protein to RNA reverse translation

RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8

🧬🦠🧪 [research][wip] Library for working with DNA, RNA, and etc acids

overcomplicated biology project spaghetti code written at 3 am ¯\_(ツ)_/¯

Analysis of codon positional dependency

Generates a codon-based alignment from an amino acid alignment and CDS sequences