Open source bioinformatics and computational biology toolbox written in F#.
Numerical Encoding for Human Genetic Variants
Nucleic and amino acid primitive types
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
deep learning experiments on biological sequences with PyTorch
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Produces PDB files from given sequences.
FLiCK - Format LeveragIng Compression frameworK
Protein to RNA reverse translation
A website made for a year-long school project on how store data in DNA, using a nucleotides as our code. The website was made using the Flask framework to incoporate some python programs
Extracts all of the possible genes from a string of DNA
Inferring likelihood and mutation rate of an evolutionary tree through the Jukes-Cantor model and Felsenstein’s algorithm
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
This C program scans through DNA nucleotides and stores, then prints the 'words' of size 10 along with their locations.
API repo: https://github.com/shamseen/pngcat-api
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