Python package that uses colorspace-based segmentation to analyze histopathology images.

Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.

A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).

Intelligent System for Analysis, Model Building And Rational Design.

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

Shape Collage generator for Windows !

A web application for atomistic modelling of coiled coils and collagens.

ImageJ / FIJI script to analyse picrosirius red stained sections imaged under polarising light

MSDS Thesis - Pan-Collagen Survival Analysis of CNV in Ovarian Cancer

Species identification based on mass spectrometry biomarker clustering

ImageJ / FIJI script to assess the orientation of collagen fibres in SHG images

chain tracing program developed to analyze AFM images of single molecules

Matlab based program for automatic chain tracing for AFM images of single molecule collagen, DNA, and other polymers.

Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma

Building collagen fibrils from amino acids sequences