[IEEE TMI 2024] MultiEYE: Dataset and Benchmark for OCT-Enhanced Retinal Disease Recognition from Fundus Images
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Oct 18, 2025 - Python
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concept-bottleneck
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A list of awesome resources related to constraint learning
model human-in-the-loop logical-constraints model-editing neurosymbolic-ai domain-constraint concept-bottleneck
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Oct 18, 2025 - Python
[CVPRW2024 FGVC11 (Best paper award)] Official pytorch implementation of the paper: "ConceptHash: Interpretable Fine-Grained Hashing via Concept Discovery"
hashing attention image-retrieval fine-grained interpretability deep-hashing concept-discovery fgvc part-based cvpr2024 concept-bottleneck cvprw2024 fine-grained-retrieval fine-grained-hashing fgvc11 concepthash
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Nov 5, 2024 - Jupyter Notebook
Interpretable spatial graph framework integrating pathway and ligand–receptor priors with tissue architecture. Generates pathway maps and H&E overlays that reveal how tumors organize and rewire signaling in space.
reproducible-research pathway-analysis graph-neural-networks interpretable-machine-learning spatial-transcriptomics tumor-microenvironment ligand-receptor concept-bottleneck deep-learning-in-biology
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Oct 4, 2025 - Jupyter Notebook
Interpretable multimodal neural network framework that integrates single-cell and spatial omics through biologically constrained, concept-bottleneck architectures.
cancer-genomics single-cell-analysis explainable-ai graph-neural-networks interpretable-machine-learning spatial-transcriptomics multi-omics-integration concept-bottleneck deep-learning-in-biology
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Oct 6, 2025 - Jupyter Notebook
Interpretable perturb-seq modeling with a pathway/TF concept bottleneck — predicts effects and identifies stable regulatory drivers that generalize across datasets.
bioinformatics reproducible-research systems-biology single-cell pathway-analysis causal-inference interpretable-ml perturb-seq concept-bottleneck
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Oct 15, 2025 - Python
Interpretable drug-response GNN with a pathway/TF concept-bottleneck; built for cross-panel generalization and conserved-subnetwork discovery.
reproducible-research pharmacogenomics pathway-analysis gdsc ccle interpretable-ml graph-neural-networks drug-response concept-bottleneck
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Oct 15, 2025 - Python
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