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The HotellingEllipse package helps draw the Hotelling's T-squared ellipse on a PCA or PLS score scatterplot by computing the Hotelling's T-squared statistic and providing the ellipse's coordinates, semi-minor, and semi-major axes lengths.
The ConfidenceEllipse package provides functions for computing the coordinate points of confidence ellipses and ellipsoids for a given bivariate and trivariate dataset, at user-defined confidence level.