A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

MIST: a metagenomic intra-species typing tool.

🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

Maintained elsewhere. See README.

A python implementation of the decontam R package for ASV filtering.

An open-source R package containing decontamination pipelines for low-biomass microbiome data