Grep sequences from a fasta file

converter raw sequence files

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

FLiCK - Format LeveragIng Compression frameworK

fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.

Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.

Index FASTA file

Fasta_splitter

Small and fast FASTA sequences length fetcher

simple and convenient program to convert fasta sequences to fastq sequences

Parse CSV files containing fasta components to a true fasta file.

Small package used to parse a file in the Fasta format

Convert EMBL files to FASTA

Idris (Idris2) port of the Haskell biocore library.

Idris (Idris2) port of the Haskell biofasta library.

Python Scripts for Haim Lab (Microbiology Research) Projects

A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Removes duplicate sequences in multifasta file