IsoCor: Isotope Correction for mass spectrometry labeling experiments

Estimation of extracellular fluxes and growth rate

Open source software for parallel labeling, steady state metabolic flux analysis

Kinetic modeling of glucose and acetate metabolisms in E. coli

Metabolomics Standards Initiative Ontology

Integration of isotopic measurements

Showcase IsoSolve

Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.

Constraint-based metabolic modeling software from the Chandrasekaran Lab

Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry

Applying implicit deep learning and convex optimization layers to infer metabolic fluxes from gene expression data

Flux response of Pseudomonas putida to increased levels of metabolic burden

Constellab brick for genome-scale metabolic modelling

Supplementary information of Millard et al. 2022