Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

MMseqs2 app to run on your workstation or servers

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

A NumPy port of the foldseek code for encoding protein structures to 3di.

Fast indexing and search of discontinuous motifs in protein structures

Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.

Many-to-many protein search and querying with Foldseek

Visualizing 3D fragments of proteins in a scatterplot using Foldseek's 3Di and Transformers.