Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX
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May 7, 2024 - Python
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forceatlas2
Here are 12 public repositories matching this topic...
An experimental GPU accelerated implementation of ForceAtlas2
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Jul 11, 2022 - C++
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
python wrapper bioinformatics dimensionality-reduction tsne forceatlas2 umap dimension-reduction force-directed-graphs wrappers seurat singlecellexperiment singlecellexperiment-objects paga phate opentsne pacmap dimensional-reduction
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Dec 6, 2024 - R
Gephi ForceAtlas2 with networkx compatibility and support for thread-based parallelism
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Jul 16, 2024 - Python
Using tiled display systems for the interactive visualization of GPGPU computed data
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Mar 13, 2022 - C++
INM-Explain is a tool for exploring medical controversies in cancer treatment, focusing on non-pharmacological interventions (INMs). It uses Twitter data, deep learning (RoBERTa), and t-SNE for sentiment analysis and topic modeling to visualize and identify controversial topics.
nlp deep-learning sentiment-analysis clustering cannabis topic-modeling lda forceatlas2 kmeans-clustering roberta inms
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Dec 18, 2024 - Jupyter Notebook
Some Network Analysis, Visualizations, artworks made using Gephi as part of the coursework 'Knowledge Engineering & Digital Humanities'
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Apr 24, 2021
A port of Gephi's Force Atlas 2 layout algorithm to Julia(Graph).
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Feb 14, 2022 - Julia
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
bioinformatics rna-seq transcriptomics single-cell rna-seq-analysis forceatlas2 glaucoma microglia scanpy rna-velocity ophtalmology velocyto scvelo
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Jul 25, 2023 - Jupyter Notebook
collab | DFC
python bash rna-seq r ubuntu transcriptomics single-cell forceatlas2 single-cell-rna-seq seurat splicing scanpy rna-velocity scvelo
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Oct 30, 2024 - Jupyter Notebook
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
python r velocity rna transcriptomics single-cell forceatlas2 seurat microglia scanpy macrophage rna-velocity scvelo cellchat oir socs3 spp1 gobp
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Dec 16, 2023 - Jupyter Notebook
Social Network Analysis for Computer Scientists - Final Project
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Dec 18, 2022 - Jupyter Notebook
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