MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
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Apr 17, 2025 - Jupyter Notebook
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foundation-models-for-biology
Here are 7 public repositories matching this topic...
LC-PLM: long-context protein language model based on BiMamba-S architecture
biology protein protein-sequences pretrained-models huggingface foundation-models mamba-state-space-models foundation-models-for-biology
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Jan 2, 2025 - Python
[Arxiv] Toward Foundational Model for Sleep Analysis Using a Multimodal Hybrid Self-Supervised Learning Framework
ssl eeg ecg sleep emg apneas eog multimodal-learning self-supervised-learning sleep-stage sleep-stage-scoring multi-sensor-fusion hypopnea foundation-model foundation-models-for-biology
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Jun 15, 2025 - Python
[npj Digital Medicine 2025] Multiple Embedding Model for EHR (MEME) used for strong prediction on Emergency Department tasks
ehr bert-model bert-embeddings ehr-data mimic-iv ehr-records foundation-model foundation-models-for-biology
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Jul 8, 2025 - Python
Benchmark gene representations from different model families
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May 29, 2025 - Jupyter Notebook
A lightweight genomic language model built from scratch, employing a BPE tokenizer and a RoBERTa architecture.
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Jul 23, 2025 - Jupyter Notebook
CEll in silico Labeling using Tabular Input Context
image-to-image-translation in-silico-labeling label-free-microscopy organelle-fluorescence-prediction cell-context-integration celtic-model out-of-distribution-data intracellular-organization deep-learning-in-cell-biology foundation-models-for-biology machine-learning-for-microscopy cellular-context
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Jul 23, 2025 - Python
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