Preprocessing fMRI scans, localizing the brain area that processes faces.

The basic structural and diffusion MRI registration with pre-processing pipeline in Python.

A volumetric version of the Mindboggle 101 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.

This is an experimental Docker image containing MIRTK, DrawEM, and FSL.

A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.

Code snippets for preprocessing DTI/MRI neuroimaging data

lnifmri_prep is a set of plain bash scripts to automate preprocessing and QC of fMRI data.

Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions

Normalising T1 weighted brain scans and lesions.

Filipino Sign Language Learning Application with Static FSL Recognition

Python library for setting up FEAT analyses (FSL)

Icicle tree to visualize the variance explained by each IC component, as output from MELODIC.

An automatic translation system from English text to Filipino Sign Language (FSL) using the E-Sign Approach

Reproduce BRATS preprocessing for a given patient (needed: 4 modalities T1, T2, T1c and FLAIR, optional: segmentation).

Investigating the cognitive control process using Flanker task fMRI dataset through statistical analysis

Preprocess head CT scans using python!

A package to import FreeSurfer/SPM/FLS ROIs to BrainVoyager as VOIs/POIs.

A repository for supplementary considerations required to run certain stroke segmentation algorithms