Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

A genome visualization python package for comparative genomics

Same species annotation lift over pipeline.

Python programs for processing GFF3 files

A DNA Sequence Alignment/Map (SAM) library for Clojure

convert various features into a GFF-like file for use in genome browsers

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Frequently used commands in bioinformatics

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

Efficiently keep track of changes to genomes

scripts for RNA-Seq analysis

fastest GTF/GFF-to-BED converter chilling around

command lines tool to annotate miRNAs with a standard mirna/isomir naming

Convert sequence IDs between ucsc/refseq/genbank

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

Convert genome annotation GTF file into plain CSV format

RNAseq pipeline for alternative splicing junctions

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

Evolutionary Bioinformatics Toolkit (EBT)

ImageFusion algorithm, SSIM and PSNR evaluation（常见图像融合算法以及SSIM和PSNR评价