📊 A universal enrichment tool for interpreting omics data
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Nov 29, 2024 - R
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gsea
Here are 68 public repositories matching this topic...
Gene Set Enrichment Analysis in Python
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Dec 16, 2024 - Python
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gene-sets phosphoproteomics gsea pathway-enrichment-analysis ptm-sea ptm-signatures ptm-sites ksea ptm-enrichment-analysis
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Oct 2, 2024 - R
Brings bulk and pseudobulk transcriptomics to the tidyverse
pipe tidy-data tidyverse pca bioconductor deseq2 entrez tidy transcripts transcriptomics tsne differential-expression edger redundancy gsea tibble gene-symbols bulk-transcriptional-analyses mds-dimensions ensembl-ids
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Dec 13, 2024 - R
MSigDB gene sets for multiple organisms in a tidy data format
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Dec 21, 2024 - R
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
workflow rna-seq pipeline nextflow shiny deseq2 microarray chip-seq atac-seq differential-expression limma gsea nf-core differential-abundance
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Dec 24, 2024 - Nextflow
Lightweight Iterative Gene set Enrichment in R
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Oct 3, 2024 - R
Enrichment Networks for Pathway Enrichment Analysis
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Apr 14, 2023 - R
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
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Oct 6, 2022 - C++
Molecular Signatures Database (MSigDB) in a data frame
r genomics tidy-data tidyverse genes r-package geneset-enrichment msigdb geneontology gsea genesets reference-data genomics-data
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Oct 4, 2024 - HTML
Gene Set Clustering based on Functional annotation
gene real-time cancer up-to-date gene-set-enrichment kegg-pathway enrichment-analysis geneontology gsea gene-set-clustering reactome-pathway functional-enrichment-analysis gene-set-analysis enrichment-testing download-pathways download-ontology functional-enrichment
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May 3, 2024 - Perl
Julia implementation of the next generation GSEA 🏔️
cli bioinformatics gene julia computational-biology rna command-line-tool single-cell gene-set-enrichment msigdb command-line-interface gsea gene-set-analysis gene-set
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Aug 26, 2024 - Julia
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
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Jun 20, 2019
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
visualization bioinformatics r web-application shiny-apps geneset-enrichment kegg kegg-pathway gsea geneset-enrichment-analysis
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Jan 27, 2020 - R
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
exploratory-data-analysis mesh principal-component-analysis gsea transferlearning bioconductor-package rna-sequencing-profiles
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Nov 4, 2024 - R
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
bioinformatics gene-sets enrichment cuda pandas python3 transcriptomics gene-set-enrichment pathway-analysis gsea
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Mar 31, 2023 - Python
Flexible gene set enrichment analysis
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Aug 30, 2021 - R
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
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Oct 8, 2024 - R
Function Enrichment analysis and Network construction
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Oct 9, 2024 - R
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