Modeling Tumor Escape Mechanisms for DC-Based Immunotherapy

Files and code used to generate the CARTAR app to identify and validate CAR targets for cancer treatment.

Analysis associated with the publication, "Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers" DOI : 10.1007/s00432-019-02982-4

Analysis of single-cell RNA-seq data from patients with immunotherapy-related myocarditis.

Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods

This project aims to model the disruptive effects of cytotoxic chemotherapeutic drugs on the immunoediting process.

T-cell receptor specificity prediction using Deep Learning

An example of immunopipe

Code for contribution to Fig. 8 of Talvard-Balland et al., JCI 2024

Graph analytics for immunotherapeutic response prediction for metastatic melanoma patients

Analyses of Penter et al., Blood Cancer Discovery 2024

Calculate and explore property indices of peptides for cancer immunotherapy study

Classification task on Immunotherapy data set

neoantigen depletion checking and detection

Multimodal immunogenomic biomarker analysis of tumours from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab

Pharmacokinetic Modeling and Optimization of Omburtamab (8H9) Delivered Through the CSF

Executable of trained model presented in Boll&Vázquez Montes de Oca et al. (unpublished).

analysis related to the FITNESS Study at OSU