A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation/classification/clustering/forecasting/anomaly detection/cleaning on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values

MOMENT: A Family of Open Time-series Foundation Models, ICML'24

A unified multi-task time series model.

Multivariate Imputation by Chained Equations

Imputation of missing values in tables.

The official PyTorch implementation of the paper "SAITS: Self-Attention-based Imputation for Time Series". A fast and state-of-the-art (SOTA) deep-learning neural network model for efficient time-series imputation (impute multivariate incomplete time series containing NaN missing data/values with machine learning). https://arxiv.org/abs/2202.08516

Awesome Deep Learning for Time-Series Imputation, including an unmissable paper and tool list about applying neural networks to impute incomplete time series containing NaN missing values/data

Data imputations library to preprocess datasets with missing data

a Python toolbox loads 172 public time series datasets for machine/deep learning with a single line of code. Datasets from multiple domains including healthcare, financial, power, traffic, weather, and etc.

(Python, R, C/C++) Isolation Forest and variations such as SCiForest and EIF, with some additions (outlier detection + similarity + NA imputation)

A framework for prototyping and benchmarking imputation methods

HandySpark - bringing pandas-like capabilities to Spark dataframes

Codebook from my GWAS cookbook

Official repository for the paper "Filling the G_ap_s: Multivariate Time Series Imputation by Graph Neural Networks" (ICLR 2022)

CRAN R Package: Time Series Missing Value Imputation

iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. It supports a variety of single-cell technologies, including scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq, and Spatial Transcriptomics (ST).

The tutorials for PyPOTS, guide you to model partially-observed time series datasets.

Beta Machine Learning Toolkit

Accurate and robust imputation of scRNA-seq data

Making imputation easy