Agent-based modeling framework in Julia

Arche -- Archetype-based Entity Component System (ECS) for Go.

nlrx NetLogo R

R Package for individual based epidemiological models

Covid Epidemics Simulation with Simpy

Epidemiology modelling framework for the Thanzi la Onse project

Multiscale Modelling Tool - mathematical modelling without the maths

Everything you need to rapidly build a model with the Arche Entity Component System (ECS).

A spatially explicit trait- and individual-based microbial systems modelling framework

DEPONS model: Simulating effects of disturbances on the North Sea harbour porpoise population

Spatial individual-based model of malaria with a focus on drug resistance evolution.

HostSwitch: An R Package to simulate host switching by a parasite

OpenGL graphics and plots for the Arche Entity Component System (ECS).

🔮🔄 Presentation for the 6th Meeting of the Agent-Based Model Study Group at University of São Paulo

How does disturbance on a landscape affect the establishment of new polyploid plant species?

Taskview for all IBM related 📦 packages in the R universe

Individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.

Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.

Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309

Within Host Dynamics