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kleborate

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gmboowa / kleborate_wf.wdl

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A WDL-based workflow for profiling Klebsiella & E. coli genomes using Kleborate. Supports local execution with Cromwell both local & cloud deployment in Terra, enabling automated analysis of assemblies with docker & integration with Terra data tables for scalable genomic surveillance.

microbial-genomics cromwell escherichia-coli resistome virulome genomic-surveillance kleborate klebsiella-species wdl-based-workflow
  • Updated Aug 10, 2025
  • Shell

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