Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
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Jun 30, 2024 - Python
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m6a-rna-modifications
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An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
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Dec 16, 2024 - Jupyter Notebook
GRIP-seq analysis pipeline.
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Dec 31, 2023 - R
🧬 A prediction pipeline of m6A RNA modifications on all SG-NEx direct RNA-Seq samples using Nextflow and FeedForward Neural Network
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Nov 14, 2023 - Jupyter Notebook
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